Factsheet for PGSC0003DMT400048452

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g019740.1.1	Tomato	plastid	71.1	71.57
PGSC0003DMT400060823	Potato	mitochondrion	52.49	68.7
HORVU2Hr1G017310.1	Barley	cytosol	42.86	62.32
CDX95049	Canola	plastid	50.17	56.34
CDY06319	Canola	plastid	48.84	56.32
KRG94786	Soybean	plastid	55.15	55.89
AT1G08570.1	Thale cress	plastid	50.5	55.27
Bra031632.1-P	Field mustard	plastid	47.84	55.17
Bra018614.1-P	Field mustard	plastid	49.5	54.98
GSMUA_Achr8P21480_001	Banana	plastid	47.84	54.14
CDX93552	Canola	plastid	48.84	54.04
GSMUA_Achr6P32280_001	Banana	plastid	48.84	54.04
KRH06734	Soybean	plastid	53.16	53.51
CDY22676	Canola	plastid	47.51	53.16
Os03t0326500-01	Rice	mitochondrion	19.27	52.73
GSMUA_Achr9P04970_001	Banana	plastid	48.17	52.16
VIT_08s0007g07620.t01	Wine grape	plastid	53.49	52.1
TraesCS4A01G130400.1	Wheat	plastid	47.18	51.45
GSMUA_Achr5P07610_001	Banana	mitochondrion	32.56	51.31
Zm00001d047555_P001	Maize	plastid	47.84	51.25
EER92835	Sorghum	plastid	45.18	51.13
TraesCS4D01G176100.1	Wheat	plastid	46.84	51.09
Os07t0684100-01	Rice	plastid	47.18	50.9
Zm00001d022518_P002	Maize	plastid	45.85	50.74
TraesCS4B01G174100.1	Wheat	plastid	46.51	50.72
HORVU4Hr1G051400.3	Barley	plastid	46.18	50.36
TraesCS2A01G100900.1	Wheat	plastid	45.18	49.82
TraesCS2D01G100500.1	Wheat	plastid	44.85	49.63
TraesCS2B01G118100.1	Wheat	plastid	44.85	49.45
KXG39469	Sorghum	plastid	46.18	49.12
PGSC0003DMT400083161	Potato	plastid	36.21	49.1
Zm00001d028992_P001	Maize	plastid	46.18	48.94
KXG36973	Sorghum	plastid	45.18	48.57
Bra021838.1-P	Field mustard	plastid	43.52	48.16
PGSC0003DMT400050229	Potato	cytosol	39.2	47.58
AT2G33270.1	Thale cress	plastid	42.86	47.25
CDY37738	Canola	endoplasmic reticulum	43.19	44.98
CDY66710	Canola	plastid	32.56	44.14
PGSC0003DMT400006408	Potato	plastid	22.59	34.87
PGSC0003DMT400008881	Potato	plastid	26.25	33.91

Protein Annotations

MapMan:10.5.7	EntrezGene:102593474	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	UniProt:M1BMG0	PFAM:PF00085
EnsemblPlantsGene:PGSC0003DMG400018819	PGSC:PGSC0003DMG400018819	EnsemblPlants:PGSC0003DMT400048452	PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF9
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002952BD8	RefSeq:XP_006348023.1	SEG:seg

Description

Thioredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400018819]

Coordinates

chr12:-:22924560..22926798

Molecular Weight (calculated)

33393.2 Da

IEP (calculated)

8.475

GRAVY (calculated)

-0.329

Length

301 amino acids

Sequence
(BLAST)

001: MMKLMSKGFM FPSSSDCGEI YHHRPLNLPG ICSFPNKSVN LSCLPSLNLS SSCLPRTDFY GRRLVINEGV SKFNRRNSQV VDITAQMSIG IRKAQKWWEK
101: GVQPNMKEVN SAQELVDSLL SAGDKLVVVD FFSPGCGGCK ALHPKLCQLA EMNPDVHFLQ VNYEEHKSMC YSLNVHVLPF FRFYRGAEGR VCSFSCTNAT
201: IKKFKDALAK YGTDRCTLGP PKGLEEKELL ALAANKDLSF NYTPKTEEAP VLVTSQKEVQ DTTPPNIESP LPLPLPLPIA STSSQTAKRD TEKEAYATSG
301: R

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.