CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06734	Soybean	plastid	83.84	83.28
HORVU2Hr1G017310.1	Barley	cytosol	45.45	65.22
Os03t0326500-01	Rice	mitochondrion	22.56	60.91
PGSC0003DMT400060823	Potato	mitochondrion	47.14	60.87
CDX95049	Canola	plastid	53.2	58.96
TraesCS4A01G130400.1	Wheat	plastid	54.21	58.33
TraesCS4D01G176100.1	Wheat	plastid	54.21	58.33
CDY06319	Canola	plastid	51.18	58.24
AT1G08570.1	Thale cress	plastid	53.87	58.18
HORVU4Hr1G051400.3	Barley	plastid	53.87	57.97
Bra018614.1-P	Field mustard	plastid	52.86	57.93
TraesCS4B01G174100.1	Wheat	plastid	53.2	57.25
Solyc10g080730.1.1	Tomato	plastid	48.82	56.42
Bra031632.1-P	Field mustard	plastid	49.49	56.32
GSMUA_Achr6P32280_001	Banana	plastid	51.52	56.25
EER92835	Sorghum	plastid	50.17	56.02
CDX93552	Canola	plastid	51.18	55.88
KXG39469	Sorghum	plastid	53.2	55.83
GSMUA_Achr5P07610_001	Banana	mitochondrion	35.69	55.5
PGSC0003DMT400048452	Potato	plastid	55.89	55.15
GSMUA_Achr9P04970_001	Banana	plastid	51.52	55.04
CDY22676	Canola	plastid	49.49	54.65
GSMUA_Achr8P21480_001	Banana	plastid	48.82	54.51
Zm00001d047555_P001	Maize	plastid	51.52	54.45
TraesCS2B01G118100.1	Wheat	plastid	49.16	53.48
TraesCS2A01G100900.1	Wheat	plastid	48.82	53.11
TraesCS2D01G100500.1	Wheat	plastid	48.48	52.94
VIT_08s0007g07620.t01	Wine grape	plastid	54.88	52.75
Zm00001d022518_P002	Maize	plastid	48.15	52.57
Solyc12g019740.1.1	Tomato	plastid	52.86	52.51
KXG36973	Sorghum	plastid	49.16	52.14
Os07t0684100-01	Rice	plastid	48.48	51.61
Zm00001d028992_P001	Maize	plastid	49.16	51.41
Bra021838.1-P	Field mustard	plastid	44.78	48.9
AT2G33270.1	Thale cress	plastid	42.42	46.15
CDY66710	Canola	plastid	34.34	45.95
CDY37738	Canola	endoplasmic reticulum	44.11	45.33
KRH63313	Soybean	plastid	39.73	43.54
KRH54570	Soybean	plastid	39.06	42.8
KRH74152	Soybean	plastid	24.92	34.91
KRH49061	Soybean	plastid	25.59	34.7

Protein Annotations

MapMan:10.5.7	Gene3D:3.40.30.10	EMBL:ACUP02012035	EnsemblPlantsGene:GLYMA_19G109400	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	UniProt:I1N864	InterPro:IPR013766
EnsemblPlants:KRG94786	ProteinID:KRG94786	ProteinID:KRG94786.1	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR43601
PANTHER:PTHR43601:SF9	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000233E180	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:36265490..36268033

Molecular Weight (calculated)

32583.0 Da

IEP (calculated)

10.084

GRAVY (calculated)

-0.365

Length

297 amino acids

Sequence
(BLAST)

001: MAEVLTKASL VSSSSSSWHG VGQRHHRRVS TVSNTCSFGS GVGKFSSLKM KSQVLRSWSS SSEFQGIKLV FHVNRGLPNR VNSRLRASTG AQMSFRLGKV
101: QKWWEKGLQP NMKEVTSAQD FVDSLLSAGD KLVVVDFFSP GCGGCKALHP KICQFAEMNP DVQFLQVNYE EHKSMCYSLN VHVLPFFRFY RGAHGRLCSF
201: SCTNATIKKF KDALAKHTPD RCSLGPTKGL EEKELLALAA NKDLSFTNSP EPLQPAHADE ELGTEPAPAP GSKSLPSPSM ILNSEVSKKR TLTTSGR

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.