CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87464	Canola	cytosol	80.5	91.51
AT1G78220.1	Thale cress	cytosol	68.88	67.76
CDY69181	Canola	cytosol	54.36	51.78
CDY38227	Canola	cytosol	54.36	51.78
CDY48771	Canola	cytosol	35.27	46.7
CDY08794	Canola	cytosol	45.64	44.35
CDY14562	Canola	cytosol	45.64	44.35
CDY42826	Canola	cytosol	49.79	44.28
CDY61201	Canola	cytosol	49.38	43.75
CDY46646	Canola	cytosol	46.89	43.46
CDY54716	Canola	cytosol	44.81	43.37
CDY51543	Canola	cytosol	46.89	43.3
CDY28698	Canola	cytosol	46.89	43.3
CDX91996	Canola	cytosol	46.89	43.3
CDX74252	Canola	cytosol	46.89	43.3
CDX81179	Canola	cytosol	44.81	43.2
CDX78381	Canola	cytosol	44.81	43.2
CDX85759	Canola	cytosol	44.4	43.15
CDY40098	Canola	cytosol	44.4	43.15
CDY00447	Canola	cytosol	46.47	43.08
CDX67405	Canola	cytosol	46.06	43.02
CDX97016	Canola	cytosol	40.66	42.98
CDX81287	Canola	cytosol	44.4	42.97
CDY71290	Canola	cytosol	45.64	42.8
CDX74521	Canola	cytosol	45.64	42.8
CDY01659	Canola	cytosol	45.64	42.8
CDY16161	Canola	cytosol	47.72	42.75
CDX85023	Canola	cytosol	47.72	42.59
CDY41483	Canola	cytosol	45.64	42.47
CDX91676	Canola	cytosol	45.64	42.47
CDX91673	Canola	cytosol	47.3	42.38
CDX88436	Canola	cytosol	45.23	41.92
CDY12024	Canola	cytosol	45.23	41.76
CDY40251	Canola	cytosol	42.32	41.63
CDY14618	Canola	cytosol	44.81	41.54
CDX79255	Canola	cytosol	44.81	41.54
CDX68022	Canola	cytosol	44.81	41.54
CDX73313	Canola	cytosol	45.64	41.51
CDY28408	Canola	cytosol	45.23	41.44
CDY20560	Canola	cytosol	42.32	38.2
CDY52206	Canola	mitochondrion	30.71	37.56
CDY56386	Canola	mitochondrion	30.71	37.56
CDX87455	Canola	cytosol	45.23	36.45
CDY24128	Canola	cytosol	47.72	35.06
CDY61631	Canola	cytosol	47.72	35.06
CDY03135	Canola	cytosol	46.47	28.43
CDX97014	Canola	cytosol, plastid	11.62	25.45

Protein Annotations

EnsemblPlants:CDX88428	EnsemblPlantsGene:GSBRNA2T00147968001	Gene3D:1.20.190.20	GO:A0A078DMG2	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0019904	InterPro:14-3-3	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	InterPro:IPR036815
PANTHER:PTHR18860	PANTHER:PTHR18860:SF32	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ProteinID:CDX88428
ProteinID:CDX88428.1	SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI0004EEA4AB	MapMan:35.1	:

Description

BnaC06g38720D

Coordinates

chrLK031855:-:964768..966140

Molecular Weight (calculated)

27386.7 Da

IEP (calculated)

5.084

GRAVY (calculated)

-0.377

Length

241 amino acids

Sequence
(BLAST)

001: MENDRGKLIY MATIAYLAKR YDDMTKSMRK VCEYEIELTD VERELLAIGY KNVMTTKRAS LRALSSIEEK EDSKGNKQNV KLINKKLEIV KHEFFSVCND
101: ILSLIDSHLI PSTTNVESTV YYYAMKANYF RYMAEFGSDA EREGAADNSL EAYKIAMETA EGGLSPTNMV RLGLALNFSI FNYGILKSTE SACKLAKKAY
201: DEAISELDGA DKQSYEDTMF IVEILRDNIS VWTDGSNIHK R

Best Arabidopsis Sequence Match ( AT1G78220.1 )
(BLAST)

001: MENEREKLIY LAKLGCQAGR YDDVMKSMRK VCELDIELSE EERDLLTTGY KNVMEAKRVS LRVISSIEKM EDSKGNDQNV KLIKGQQEMV KYEFFNVCND
101: ILSLIDSHLI PSTTTNVESI VLFNRVKGDY FRYMAEFGSD AERKENADNS LDAYKVAMEM AENSLAPTNM VRLGLALNFS IFNYEIHKSI ESACKLVKKA
201: YDEAITELDG LDKNICEESM YIIEMLKYNL STWTSGDGNG NKTDG

Arabidopsis Description

GF14 PIGeneral regulatory factor 13 [Source:UniProtKB/TrEMBL;Acc:F4IA59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.