Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G34760.1 | CDY14376 | AT5G58550.1 | 23512855 |
| AT1G34760.1 | CDY32974 | AT5G58550.1 | 23512855 |
| AT1G34760.1 | CDY66209 | AT5G58550.1 | 23512855 |
| AT1G34760.1 | CDX81296 | AT5G65800.1 | 23512855 |
| AT1G34760.1 | CDY18674 | AT5G65800.1 | 23512855 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G34760.1 | Thale cress | cytosol | 52.79 | 81.57 |
| PGSC0003DMT400016422 | Potato | cytosol | 48.73 | 76.19 |
| VIT_18s0001g05720.t01 | Wine grape | cytosol | 48.48 | 75.79 |
| CDY69181 | Canola | cytosol | 45.18 | 70.36 |
| Solyc04g074230.2.1 | Tomato | extracellular | 47.46 | 70.3 |
| CDY38227 | Canola | cytosol | 44.92 | 69.96 |
| CDY16161 | Canola | cytosol | 46.7 | 68.4 |
| CDX85023 | Canola | cytosol | 46.7 | 68.15 |
| CDY40251 | Canola | cytosol | 40.36 | 64.9 |
| CDY61201 | Canola | cytosol | 43.65 | 63.24 |
| CDY42826 | Canola | cytosol | 43.4 | 63.1 |
| GSMUA_Achr2P22240_001 | Banana | cytosol | 40.86 | 62.65 |
| CDY48771 | Canola | cytosol | 28.93 | 62.64 |
| CDY01659 | Canola | cytosol | 40.1 | 61.48 |
| CDX74521 | Canola | cytosol | 40.1 | 61.48 |
| CDY71290 | Canola | cytosol | 40.1 | 61.48 |
| CDX67405 | Canola | cytosol | 40.1 | 61.24 |
| CDY28698 | Canola | cytosol | 40.36 | 60.92 |
| CDY51543 | Canola | cytosol | 40.1 | 60.54 |
| CDY14562 | Canola | cytosol | 38.07 | 60.48 |
| CDY08794 | Canola | cytosol | 38.07 | 60.48 |
| CDX91996 | Canola | cytosol | 39.85 | 60.15 |
| CDX74252 | Canola | cytosol | 39.85 | 60.15 |
| CDY20560 | Canola | cytosol | 40.61 | 59.93 |
| CDX81287 | Canola | cytosol | 37.82 | 59.84 |
| CDY54716 | Canola | cytosol | 37.82 | 59.84 |
| CDY28408 | Canola | cytosol | 39.85 | 59.7 |
| CDX88436 | Canola | cytosol | 39.34 | 59.62 |
| CDY12024 | Canola | cytosol | 39.34 | 59.39 |
| CDX73313 | Canola | cytosol | 39.59 | 58.87 |
| CDY00447 | Canola | cytosol | 38.83 | 58.85 |
| CDX79255 | Canola | cytosol | 38.83 | 58.85 |
| CDX68022 | Canola | cytosol | 38.83 | 58.85 |
| CDY46646 | Canola | cytosol | 38.58 | 58.46 |
| CDX78381 | Canola | cytosol | 37.06 | 58.4 |
| CDX81179 | Canola | cytosol | 37.06 | 58.4 |
| CDY41483 | Canola | cytosol | 38.32 | 58.3 |
| CDY14618 | Canola | cytosol | 38.32 | 58.08 |
| CDY40098 | Canola | cytosol | 36.55 | 58.06 |
| CDX85759 | Canola | cytosol | 36.55 | 58.06 |
| CDX91676 | Canola | cytosol | 38.07 | 57.92 |
| CDX97016 | Canola | cytosol | 33.25 | 57.46 |
| CDY61631 | Canola | cytosol | 46.7 | 56.1 |
| CDY24128 | Canola | cytosol | 46.45 | 55.79 |
| CDX91673 | Canola | cytosol | 36.04 | 52.79 |
| CDX87455 | Canola | cytosol | 39.59 | 52.17 |
| EES10091 | Sorghum | cytosol | 32.49 | 51.82 |
| TraesCS4B01G148900.2 | Wheat | cytosol | 31.47 | 49.8 |
| CDX87464 | Canola | cytosol | 25.63 | 47.64 |
| CDX88428 | Canola | cytosol | 28.43 | 46.47 |
| TraesCS4A01G167100.1 | Wheat | cytosol | 28.68 | 46.31 |
| HORVU4Hr1G031620.11 | Barley | cytosol | 30.71 | 44.81 |
| CDY52206 | Canola | mitochondrion | 21.32 | 42.64 |
| CDY56386 | Canola | mitochondrion | 21.32 | 42.64 |
| CDX97014 | Canola | cytosol, plastid | 10.41 | 37.27 |
| Os11t0609600-01 | Rice | cytosol | 18.53 | 36.5 |
| Zm00001d048868_P002 | Maize | extracellular | 32.99 | 30.3 |
Protein Annotations
| InterPro:14-3-3 | InterPro:14-3-3_CS | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain | MapMan:35.1 | GO:A0A078EMB9 |
| EnsemblPlants:CDY03135 | ProteinID:CDY03135 | ProteinID:CDY03135.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0019904 | EnsemblPlantsGene:GSBRNA2T00115551001 | InterPro:IPR036815 | PFAM:PF00244 | PRINTS:PR00305 | ScanProsite:PS00796 |
| PANTHER:PTHR18860 | PANTHER:PTHR18860:SF59 | SMART:SM00101 | SUPFAM:SSF48445 | TMHMM:TMhelix | UniParc:UPI0004EEB322 |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g08380D
Coordinates
chrLK031940:+:795012..797963
Molecular Weight (calculated)
45020.4 Da
IEP (calculated)
5.564
GRAVY (calculated)
-0.474
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEREKQVY LAKLNEQAER NDGNTKSLLV VFLRIFFIVR SLSVIVELCF LALCFIFLSK YKVKALNVEL TIPERNLLSV GYKNVIGARR ASWRILSSIE
101: QKEESRGHEE NAKRVKDYRP KVEDELSKIC YDILAVVDKH LVPSATSGEY TVFYYKMKGD YFRYLAEFKF DSDRDEAVKQ SLKAYEASTT TATSELGPTH
201: PIRLGLALNF SVFYYEIMNS LERACHLAKQ AFVEAIAELD SLNEDSYKDN TLIMQLLRDN LTLWTSDLEE GGEQSKEDNS QDEVSFKPKN FRRNALQLPR
301: LATMPPSPQT SHSGSNSYPK TNENPFLIPQ EPVNSPDPLF YNPELVRSPT LTFPADFRIP DSASVPVPPD PKPILTQNPT ESTEVHPRRL SNLE
101: QKEESRGHEE NAKRVKDYRP KVEDELSKIC YDILAVVDKH LVPSATSGEY TVFYYKMKGD YFRYLAEFKF DSDRDEAVKQ SLKAYEASTT TATSELGPTH
201: PIRLGLALNF SVFYYEIMNS LERACHLAKQ AFVEAIAELD SLNEDSYKDN TLIMQLLRDN LTLWTSDLEE GGEQSKEDNS QDEVSFKPKN FRRNALQLPR
301: LATMPPSPQT SHSGSNSYPK TNENPFLIPQ EPVNSPDPLF YNPELVRSPT LTFPADFRIP DSASVPVPPD PKPILTQNPT ESTEVHPRRL SNLE
001: MENERAKQVY LAKLNEQAER YDEMVEAMKK VAALDVELTI EERNLLSVGY KNVIGARRAS WRILSSIEQK EESKGNEQNA KRIKDYRTKV EEELSKICYD
101: ILAVIDKHLV PFATSGESTV FYYKMKGDYF RYLAEFKSGA DREEAADLSL KAYEAATSSA STELSTTHPI RLGLALNFSV FYYEILNSPE RACHLAKRAF
201: DEAIAELDSL NEDSYKDSTL IMQLLRDNLT LWTSDLEEGG EQSKGHNQQD EVNKI
101: ILAVIDKHLV PFATSGESTV FYYKMKGDYF RYLAEFKSGA DREEAADLSL KAYEAATSSA STELSTTHPI RLGLALNFSV FYYEILNSPE RACHLAKRAF
201: DEAIAELDSL NEDSYKDSTL IMQLLRDNLT LWTSDLEEGG EQSKGHNQQD EVNKI
Arabidopsis Description
GRF11general regulatory factor 11 [Source:TAIR;Acc:AT1G34760]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.