CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G10450.1	Thale cress	extracellular	23.64	31.71
Zm00001d028091_P001	Maize	cytosol	40.0	25.0
Zm00001d015779_P001	Maize	nucleus	40.0	24.72
CDX97016	Canola	cytosol	44.55	21.49
CDY48771	Canola	cytosol	35.45	21.43
CDY14562	Canola	cytosol	48.18	21.37
CDY08794	Canola	cytosol	48.18	21.37
CDX85759	Canola	cytosol	47.27	20.97
CDY40098	Canola	cytosol	47.27	20.97
CDX81287	Canola	cytosol	47.27	20.88
CDY54716	Canola	cytosol	47.27	20.88
CDX81179	Canola	cytosol	46.36	20.4
CDX78381	Canola	cytosol	46.36	20.4
CDY41483	Canola	cytosol	45.45	19.3
CDX91676	Canola	cytosol	45.45	19.3
CDX79255	Canola	cytosol	45.45	19.23
CDX68022	Canola	cytosol	45.45	19.23
CDY46646	Canola	cytosol	45.45	19.23
CDX88436	Canola	cytosol	45.45	19.23
CDY00447	Canola	cytosol	45.45	19.23
CDY01659	Canola	cytosol	44.55	19.07
CDX74521	Canola	cytosol	44.55	19.07
CDX67405	Canola	cytosol	44.55	18.99
CDX73313	Canola	cytosol	45.45	18.87
CDY14618	Canola	cytosol	44.55	18.85
CDY12024	Canola	cytosol	44.55	18.77
CDX74252	Canola	cytosol	44.55	18.77
CDY28698	Canola	cytosol	44.55	18.77
CDX91996	Canola	cytosol	44.55	18.77
CDY51543	Canola	cytosol	44.55	18.77
CDY71290	Canola	cytosol	43.64	18.68
CDY28408	Canola	cytosol	44.55	18.63
CDY40251	Canola	cytosol	40.91	18.37
GSMUA_Achr7P00550_001	Banana	cytosol	41.82	16.97
CDY20560	Canola	cytosol	40.91	16.85
CDY16161	Canola	cytosol	40.91	16.73
CDX85023	Canola	cytosol	40.91	16.67
CDY42826	Canola	cytosol	40.91	16.61
CDY61201	Canola	cytosol	40.91	16.54
CDX87455	Canola	cytosol	44.55	16.39
CDY69181	Canola	cytosol	37.27	16.21
CDY38227	Canola	cytosol	37.27	16.21
CDY61631	Canola	cytosol	40.91	13.72
CDY24128	Canola	cytosol	40.91	13.72
CDX91673	Canola	cytosol	30.91	12.64
CDX88428	Canola	cytosol	25.45	11.62
CDY03135	Canola	cytosol	37.27	10.41
CDX87464	Canola	cytosol	19.09	9.91
CDY52206	Canola	mitochondrion	10.91	6.09
CDY56386	Canola	mitochondrion	10.91	6.09

Protein Annotations

EnsemblPlants:CDX97014	EnsemblPlantsGene:GSBRNA2T00103972001	Gene3D:1.20.190.20	GO:A0A078E8J0	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0019904	InterPro:14-3-3	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	InterPro:IPR036815
ncoils:Coil	PANTHER:PTHR18860	PANTHER:PTHR18860:SF26	PFAM:PF00244	ProteinID:CDX97014	ProteinID:CDX97014.1
SEG:seg	SUPFAM:SSF48445	UniParc:UPI0004EE3765	MapMan:35.1	:	:

Description

BnaC09g46110D

Coordinates

chrLK031897:-:198911..200405

Molecular Weight (calculated)

12166.6 Da

IEP (calculated)

4.154

GRAVY (calculated)

0.037

Length

110 amino acids

Sequence
(BLAST)

001: MFCFVKDIAA ADNAPTHPIV LPSTSQCSTM SSSILQTKLV TWPRSMLLFI LGLMSHSAYT TTPTSAFEEA IAELDTLGEE SYKDSALIMQ LLRDNLTLRT
101: SDMQEQMDEA

Best Arabidopsis Sequence Match ( AT5G10450.1 )
(BLAST)

001: MAATLGRDQY VYMAKLAEQA ERYEEMVQFM EQLVTGATPA EELTVEERNL LSVAYKNVIG SLRAAWRIVS SIEQKEESRK NDEHVSLVKD YRSKVESELS
101: SVCSGILKLL DSHLIPSAGA SESKVFYLKM KGDYHRYMAE FKSGDERKTA AEDTMLAYKA AQDIAAADMA PTHPIRLGLA LNFSVFYYEI LNSSDKACNM
201: AKQAFEEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQEQMDEA

Arabidopsis Description

GRF6G-box regulating factor 6 [Source:TAIR;Acc:AT5G10450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.