Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26480.1 | CDY14376 | AT5G58550.1 | 23512855 |
| AT1G26480.1 | CDY32974 | AT5G58550.1 | 23512855 |
| AT1G26480.1 | CDY66209 | AT5G58550.1 | 23512855 |
| AT1G26480.1 | CDX81296 | AT5G65800.1 | 23512855 |
| AT1G26480.1 | CDY18674 | AT5G65800.1 | 23512855 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024713.1-P | Field mustard | cytosol | 97.78 | 98.88 |
| CDY16161 | Canola | cytosol | 98.15 | 98.51 |
| AT1G26480.1 | Thale cress | cytosol | 92.96 | 93.66 |
| CDY40251 | Canola | cytosol | 84.07 | 92.65 |
| KRG89486 | Soybean | cytosol | 81.48 | 84.62 |
| KRH50527 | Soybean | cytosol | 81.11 | 84.56 |
| CDY20560 | Canola | cytosol | 83.33 | 84.27 |
| KRH70879 | Soybean | endoplasmic reticulum | 80.37 | 83.78 |
| VIT_01s0011g00620.t01 | Wine grape | cytosol | 82.22 | 83.77 |
| KRH75027 | Soybean | endoplasmic reticulum | 80.0 | 83.4 |
| Solyc01g010360.2.1 | Tomato | cytosol | 80.37 | 79.2 |
| Solyc05g012420.2.1 | Tomato | unclear | 83.33 | 78.95 |
| CDY61631 | Canola | cytosol | 95.19 | 78.35 |
| PGSC0003DMT400072941 | Potato | cytosol | 82.59 | 78.25 |
| CDY24128 | Canola | cytosol | 94.81 | 78.05 |
| CDY69181 | Canola | cytosol | 72.22 | 77.08 |
| CDY38227 | Canola | cytosol | 71.85 | 76.68 |
| CDY61201 | Canola | cytosol | 70.0 | 69.49 |
| CDY42826 | Canola | cytosol | 69.26 | 69.0 |
| CDX91996 | Canola | cytosol | 66.67 | 68.97 |
| CDY01659 | Canola | cytosol | 65.56 | 68.87 |
| CDX74521 | Canola | cytosol | 65.56 | 68.87 |
| CDY48771 | Canola | cytosol | 46.3 | 68.68 |
| CDY71290 | Canola | cytosol | 65.19 | 68.48 |
| CDX67405 | Canola | cytosol | 65.19 | 68.22 |
| CDY28698 | Canola | cytosol | 65.93 | 68.2 |
| CDY51543 | Canola | cytosol | 65.93 | 68.2 |
| CDX74252 | Canola | cytosol | 65.93 | 68.2 |
| CDX68022 | Canola | cytosol | 64.07 | 66.54 |
| CDX88436 | Canola | cytosol | 64.07 | 66.54 |
| CDX79255 | Canola | cytosol | 64.07 | 66.54 |
| CDY12024 | Canola | cytosol | 64.07 | 66.28 |
| CDY14618 | Canola | cytosol | 63.7 | 66.15 |
| CDY28408 | Canola | cytosol | 64.07 | 65.78 |
| CDX73313 | Canola | cytosol | 64.44 | 65.66 |
| CDY41483 | Canola | cytosol | 61.85 | 64.48 |
| CDY08794 | Canola | cytosol | 58.89 | 64.11 |
| CDX91676 | Canola | cytosol | 61.48 | 64.09 |
| CDY14562 | Canola | cytosol | 58.52 | 63.71 |
| CDY46646 | Canola | cytosol | 60.74 | 63.08 |
| CDY00447 | Canola | cytosol | 60.74 | 63.08 |
| CDY54716 | Canola | cytosol | 58.15 | 63.05 |
| CDX81287 | Canola | cytosol | 58.15 | 63.05 |
| CDY40098 | Canola | cytosol | 57.04 | 62.1 |
| CDX85759 | Canola | cytosol | 57.04 | 62.1 |
| CDX81179 | Canola | cytosol | 57.41 | 62.0 |
| CDX78381 | Canola | cytosol | 57.41 | 62.0 |
| CDX97016 | Canola | cytosol | 50.0 | 59.21 |
| CDX87455 | Canola | cytosol | 64.07 | 57.86 |
| CDX91673 | Canola | cytosol | 57.04 | 57.25 |
| CDX87464 | Canola | cytosol | 38.15 | 48.58 |
| CDX88428 | Canola | cytosol | 42.59 | 47.72 |
| CDY03135 | Canola | cytosol | 68.15 | 46.7 |
| CDY56386 | Canola | mitochondrion | 33.33 | 45.69 |
| CDY52206 | Canola | mitochondrion | 33.33 | 45.69 |
| CDX97014 | Canola | cytosol, plastid | 16.67 | 40.91 |
Protein Annotations
| Gene3D:1.20.190.20 | InterPro:14-3-3 | InterPro:14-3-3_CS | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain | MapMan:35.1 |
| GO:A0A078DCL6 | EnsemblPlants:CDX85023 | ProteinID:CDX85023 | ProteinID:CDX85023.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0019904 | EnsemblPlantsGene:GSBRNA2T00142458001 | InterPro:IPR036815 | PFAM:PF00244 |
| PIRSF:PIRSF000868 | PRINTS:PR00305 | ScanProsite:PS00796 | ScanProsite:PS00797 | PANTHER:PTHR18860 | PANTHER:PTHR18860:SF59 |
| SMART:SM00101 | SUPFAM:SSF48445 | UniParc:UPI0004EF3E5E | SEG:seg | : | : |
Description
BnaC05g20320D
Coordinates
chrLK031839:-:1574647..1576150
Molecular Weight (calculated)
30710.0 Da
IEP (calculated)
4.515
GRAVY (calculated)
-0.655
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGTDKERE IFVYLAKLSE QAERYDEMVE TMKKVAKVDS ELTVEERNLL SVGYKNVIGA RRASWRIMSS IEQKEESKGN ESNVKTIKGY RQKVEDELAN
101: ICQDILSIID QHLIPHATSG EATVFYYKMK GDYYRYLAEF KTEQERKEAS EQSLKGYEAA TQAASTELPS THPIRLGLAL NFSVFYYEIM NSPERACHLA
201: KQAFDEAIAE LDTLSEESYK DSTLIMQLLR DNLTLWTSDL PEDGGEDNAK TDEPKKEEAK PAEATEVINL
101: ICQDILSIID QHLIPHATSG EATVFYYKMK GDYYRYLAEF KTEQERKEAS EQSLKGYEAA TQAASTELPS THPIRLGLAL NFSVFYYEIM NSPERACHLA
201: KQAFDEAIAE LDTLSEESYK DSTLIMQLLR DNLTLWTSDL PEDGGEDNAK TDEPKKEEAK PAEATEVINL
001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN
Arabidopsis Description
GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.