Factsheet for VIT_01s0011g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0840g00010.t01	cytosol
VIT_00s1437g00010.t01	cytosol
VIT_06s0004g07020.t01	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26480.1	VIT_06s0004g07020.t01	AT5G58550.1	23512855
AT1G26480.1	VIT_00s0840g00010.t01	AT5G65800.1	23512855
AT1G26480.1	VIT_00s1437g00010.t01	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70879	Soybean	endoplasmic reticulum	90.19	92.28
KRH75027	Soybean	endoplasmic reticulum	89.43	91.51
KRH50527	Soybean	cytosol	87.92	89.96
KRG89486	Soybean	cytosol	87.55	89.23
Solyc01g010360.2.1	Tomato	cytosol	87.92	85.04
Bra024713.1-P	Field mustard	cytosol	83.77	83.15
Solyc05g012420.2.1	Tomato	unclear	89.06	82.81
PGSC0003DMT400072941	Potato	cytosol	88.68	82.46
CDX85023	Canola	cytosol	83.77	82.22
CDY16161	Canola	cytosol	83.4	82.16
AT1G26480.1	Thale cress	cytosol	83.02	82.09
Bra016273.1-P	Field mustard	cytosol	83.4	81.85
CDY40251	Canola	cytosol	75.09	81.22
VIT_18s0001g05720.t01	Wine grape	cytosol	75.85	79.76
VIT_19s0014g01420.t01	Wine grape	cytosol	75.85	76.14
CDY20560	Canola	cytosol	74.34	73.78
VIT_07s0191g00090.t01	Wine grape	cytosol	67.92	70.59
VIT_18s0001g06330.t01	Wine grape	extracellular	67.92	69.23
VIT_10s0003g01240.t01	Wine grape	cytosol	74.34	68.88
VIT_14s0006g03230.t01	Wine grape	cytosol	67.17	67.94
CDY61631	Canola	cytosol	83.77	67.68
CDY24128	Canola	cytosol	83.4	67.38
Bra012455.1-P	Field mustard	cytosol	75.09	65.25
VIT_18s0001g07240.t01	Wine grape	cytosol	61.51	64.68
VIT_00s0199g00190.t01	Wine grape	cytosol	61.13	64.03
VIT_00s0199g00140.t01	Wine grape	cytosol	47.17	21.51

Protein Annotations

Gene3D:1.20.190.20	EntrezGene:100254211	wikigene:100254211	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf
InterPro:14-3-3_domain	MapMan:35.1	ProteinID:CCB51074	ProteinID:CCB51074.1	ncoils:Coil	UniProt:F6HF87
EMBL:FN595752	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815
EntrezGene:LOC100254211	wikigene:LOC100254211	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796
ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF12	SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI00021081DD
ArrayExpress:VIT_01s0011g00620	EnsemblPlantsGene:VIT_01s0011g00620	EnsemblPlants:VIT_01s0011g00620.t01	unigene:Vvi.19065	RefSeq:XP_002269100	RefSeq:XP_002269100.1

Description

No Description!

Coordinates

chr1:-:563253..566683

Molecular Weight (calculated)

30161.5 Da

IEP (calculated)

4.543

GRAVY (calculated)

-0.617

Length

265 amino acids

Sequence
(BLAST)

001: MSTEKERETQ VYMAKLAEQA ERYEEMVECM KTVAKLDLEL TVEERNLLSV GYKNVIGARR ASWRIMSSIE QKEESKGNEQ NVKLIKGYRQ KVEEELSKIC
101: GDILTIIDKH LIPSSGSGEA TVFYYKMKGD YYRYLAEFKT DQERKEASEQ SLKGYEACSL LAASSTANTD LPSTHPIRLG LALNFSVFYY EIMNSPERAC
201: HLAKQAFDEA IAELDTLSEE SYKDSTLIMQ LLRDNLTLWT SDLPEDGGED NFKGEEPKAA EPTEH

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.