Factsheet for Bra016273.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002638.1-P	nucleus
Bra022691.1-P	nucleus
Bra024420.1-P	cytosol
Bra031846.1-P	cytosol
Bra037829.1-P	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26480.1	Bra002638.1-P	AT5G58550.1	23512855
AT1G26480.1	Bra022691.1-P	AT5G58550.1	23512855
AT1G26480.1	Bra024420.1-P	AT5G65800.1	23512855
AT1G26480.1	Bra031846.1-P	AT5G65800.1	23512855
AT1G26480.1	Bra037829.1-P	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024713.1-P	Field mustard	cytosol	94.81	95.88
AT1G26480.1	Thale cress	cytosol	93.33	94.03
KRH70879	Soybean	endoplasmic reticulum	81.48	84.94
KRH75027	Soybean	endoplasmic reticulum	80.74	84.17
KRH50527	Soybean	cytosol	80.74	84.17
KRG89486	Soybean	cytosol	80.74	83.85
VIT_01s0011g00620.t01	Wine grape	cytosol	81.85	83.4
CDY61631	Canola	cytosol	100.0	82.32
CDY24128	Canola	cytosol	99.26	81.71
Solyc05g012420.2.1	Tomato	unclear	83.33	78.95
Solyc01g010360.2.1	Tomato	cytosol	80.0	78.83
PGSC0003DMT400072941	Potato	cytosol	82.59	78.25
Bra012455.1-P	Field mustard	cytosol	86.67	76.72
Bra031383.1-P	Field mustard	cytosol	70.74	75.49
Bra000268.1-P	Field mustard	cytosol	69.26	71.37
Bra001049.1-P	Field mustard	cytosol	67.04	69.35
Bra040592.1-P	Field mustard	cytosol	66.67	68.97
Bra028187.1-P	Field mustard	cytosol	65.56	68.87
Bra028409.1-P	Field mustard	cytosol	64.44	67.44
Bra034430.1-P	Field mustard	cytosol	64.81	66.54
Bra035027.1-P	Field mustard	cytosol	64.07	66.54
Bra008355.1-P	Field mustard	cytosol	61.48	66.4
Bra003649.1-P	Field mustard	cytosol	63.7	66.15
Bra028068.1-P	Field mustard	cytosol	63.7	65.9
Bra024384.1-P	Field mustard	cytosol	59.26	64.52
Bra037818.1-P	Field mustard	cytosol	59.26	64.26
Bra016380.1-P	Field mustard	cytosol	61.48	64.09
Bra006061.1-P	Field mustard	cytosol	58.15	62.55
Bra012325.1-P	Field mustard	cytosol	60.37	61.98
Bra028586.1-P	Field mustard	cytosol	57.78	56.73
Bra035020.1-P	Field mustard	cytosol	44.07	48.57

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
EnsemblPlantsGene:Bra016273	EnsemblPlants:Bra016273.1	EnsemblPlants:Bra016273.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815	UniProt:M4DIE6	PFAM:PF00244	PIRSF:PIRSF000868
PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF59	SMART:SM00101
SUPFAM:SSF48445	UniParc:UPI000254601C	SEG:seg	:	:	:

Description

AT1G26480 (E=3e-136) GRF12, GF14 IOTA | GRF12 (GENERAL REGULATORY FACTOR 12); protein binding / protein phosphorylated amino acid binding

Coordinates

chrA08:-:17648056..17649389

Molecular Weight (calculated)

30678.9 Da

IEP (calculated)

4.549

GRAVY (calculated)

-0.673

Length

270 amino acids

Sequence
(BLAST)

001: MSSGSDKDRE TFVYLAKLSE QAERYDEMVE TMKKVAKVDS ELTVEERNLL SVGYKNVIGA RRASWRIMSS IEQKEESKGN ESNVKHIKGY RQKVEDELAD
101: ICKDILTIID QHLIPHATSG EATVFYYKMK GDYYRYLAEF KTEQERKEAS EQSLKGYEAA TQAASTDLPS THPIRLGLAL NFSVFYYEIM NSPERACHLA
201: KQAFDEAIAE LDTLSEESYK DSTLIMQLLR DNLTLWTSDL PEDGGEDNIK TDEAKQEPAK PAEATEVTNL

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.