Factsheet for Bra028409.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003253.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra038553.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38480.1	Bra038553.1-P	AT2G18876.1	21798944
AT5G38480.1	Bra003253.1-P	AT3G56850.1	21798944
AT5G38480.1	Bra007274.1-P	AT3G56850.1	21798944
AT5G38480.1	Bra007276.1-P	AT3G56850.1	21798944
AT5G38480.1	Bra014668.1-P	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67405	Canola	cytosol	99.61	99.61
CDY71290	Canola	cytosol	98.45	98.83
AT5G38480.1	Thale cress	cytosol	93.41	94.51
Bra028187.1-P	Field mustard	cytosol	93.8	94.16
KRH01783	Soybean	nucleus	87.98	88.33
Bra040592.1-P	Field mustard	cytosol	87.98	86.97
Solyc03g034180.2.1	Tomato	cytosol	86.43	86.43
VIT_14s0006g03230.t01	Wine grape	cytosol	87.6	86.26
Bra001049.1-P	Field mustard	cytosol	86.82	85.82
GSMUA_Achr5P23090_001	Banana	cytosol	43.8	85.61
GSMUA_AchrUn_...	Banana	cytosol	43.41	85.5
PGSC0003DMT400062153	Potato	cytosol	85.66	85.0
GSMUA_AchrUn_...	Banana	cytosol	43.41	84.85
Solyc02g063070.2.1	Tomato	plastid	85.27	84.62
Bra008355.1-P	Field mustard	cytosol	81.01	83.6
KRH46909	Soybean	cytosol	84.11	83.46
PGSC0003DMT400050389	Potato	cytosol	83.33	82.69
TraesCS4D01G046400.2	Wheat	golgi	82.56	81.61
TraesCS4B01G045500.2	Wheat	cytosol	82.56	81.61
TraesCS4A01G268700.1	Wheat	cytosol	82.56	81.61
HORVU4Hr1G007370.1	Barley	plasma membrane	82.56	81.61
Os03t0710800-01	Rice	nucleus, plasma membrane	82.17	81.54
Bra003649.1-P	Field mustard	cytosol	81.78	81.15
Bra035027.1-P	Field mustard	cytosol	81.4	80.77
Bra028068.1-P	Field mustard	cytosol	81.4	80.46
Bra034430.1-P	Field mustard	cytosol	81.4	79.85
OQU83613	Sorghum	cytosol	81.4	78.95
Zm00001d053090_P001	Maize	plastid	81.4	78.36
Os11t0546900-01	Rice	plasma membrane	80.23	78.11
Bra016380.1-P	Field mustard	cytosol	77.91	77.61
TraesCS4D01G155900.1	Wheat	plastid	79.46	77.07
TraesCS4A01G151000.2	Wheat	cytosol	79.46	75.93
Zm00001d007446_P003	Maize	cytosol	81.01	75.72
TraesCS4B01G159900.1	Wheat	cytosol	79.84	75.46
Bra037818.1-P	Field mustard	cytosol	72.48	75.1
Bra024384.1-P	Field mustard	cytosol	72.09	75.0
Bra012325.1-P	Field mustard	cytosol	76.36	74.9
Bra006061.1-P	Field mustard	cytosol	69.77	71.71
Zm00001d048554_P001	Maize	cytosol	53.1	69.54
HORVU4Hr1G043300.1	Barley	cytosol	80.23	69.0
Bra028586.1-P	Field mustard	cytosol	72.48	68.0
Bra031383.1-P	Field mustard	cytosol	66.67	67.98
Zm00001d021885_P001	Maize	mitochondrion	42.25	66.06
Zm00001d033357_P001	Maize	cytosol	53.1	65.55
Bra024713.1-P	Field mustard	cytosol	67.83	65.54
Zm00001d007968_P001	Maize	cytosol	52.33	64.59
Zm00001d017434_P001	Maize	cytosol	52.33	64.59
Bra000268.1-P	Field mustard	cytosol	65.5	64.5
Bra016273.1-P	Field mustard	cytosol	67.44	64.44
HORVU4Hr1G031770.1	Barley	cytosol, plastid	34.5	52.05
Bra012455.1-P	Field mustard	cytosol	59.69	50.49
Zm00001d018856_P001	Maize	cytosol, plastid	57.75	49.34
Bra035020.1-P	Field mustard	cytosol	43.41	45.71
Zm00001d039042_P001	Maize	cytosol, nucleus, plasma membrane, plastid	58.14	36.85

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
EnsemblPlantsGene:Bra028409	EnsemblPlants:Bra028409.1	EnsemblPlants:Bra028409.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815	UniProt:M4EHZ4	PFAM:PF00244	PIRSF:PIRSF000868
PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF26	SMART:SM00101
SUPFAM:SSF48445	UniParc:UPI0002543238	:	:	:	:

Description

AT5G38480 (E=5e-134) GRF3, RCI1 | GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid binding

Coordinates

chrA02:+:125908..126905

Molecular Weight (calculated)

28994.1 Da

IEP (calculated)

4.445

GRAVY (calculated)

-0.457

Length

258 amino acids

Sequence
(BLAST)

001: MSSSSREENV YMAKLAEQAE RYEEMVEFME KVAKSVDNEE LTVEERNLLS VAYKNVIGAR RASWRIISSI EQKEESKGNE DHVAIIRDYR GKIEAELSKI
101: CDGILNVLEA HLIPSASPAE SKVFYLKMKG DYHRYLAEFK AGNERKDAAE STLVAYKSAQ DIATAELAPT HPIRLGLALN FSVFYYEILN SPDRACSLAK
201: QAFDEAIAEL DTLGEESYKD STLIMQLLRD NLTLWTSDMT DEAGDEIKET SKPEGAAE

Best Arabidopsis Sequence Match ( AT5G38480.1 )
(BLAST)

001: MSTREENVYM AKLAEQAERY EEMVEFMEKV AKTVDVEELS VEERNLLSVA YKNVIGARRA SWRIISSIEQ KEESKGNEDH VAIIKDYRGK IESELSKICD
101: GILNVLEAHL IPSASPAESK VFYLKMKGDY HRYLAEFKAG AERKEAAEST LVAYKSASDI ATAELAPTHP IRLGLALNFS VFYYEILNSP DRACSLAKQA
201: FDDAIAELDT LGEESYKDST LIMQLLRDNL TLWTSDMTDE AGDEIKEASK PDGAE

Arabidopsis Description

GRF3RCI1 [Source:UniProtKB/TrEMBL;Acc:A0A178UA42]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.