Factsheet for Bra038553.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003649.1-P
Bra008355.1-P
Bra012325.1-P
Bra016380.1-P
Bra035027.1-P
Bra038553.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	Bra003649.1-P	AT1G78300.1	21798944
AT2G18876.1	Bra008355.1-P	AT1G78300.1	21798944
AT2G18876.1	Bra012325.1-P	AT1G78300.1	21798944
AT2G18876.1	Bra016380.1-P	AT1G78300.1	21798944
AT2G18876.1	Bra035027.1-P	AT1G78300.1	21798944
AT2G18876.1	Bra038553.1-P	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30300	Canola	nucleus	92.56	93.04
AT2G18876.1	Thale cress	cytosol	86.15	87.96
KRH02865	Soybean	cytosol	73.08	75.4
KRH19028	Soybean	cytosol	72.56	74.87
Bra006821.1-P	Field mustard	cytosol	68.46	73.55
VIT_11s0052g00890.t01	Wine grape	cytosol	71.79	73.3
Solyc07g019530.2.1	Tomato	cytosol	69.49	69.85
GSMUA_Achr7P05020_001	Banana	cytosol	67.44	69.76
GSMUA_Achr4P20560_001	Banana	cytosol	67.69	68.39
HORVU7Hr1G060360.1	Barley	plastid	58.72	67.95
KXG24799	Sorghum	mitochondrion, plastid	67.44	67.61
Zm00001d050216_P003	Maize	plastid	67.18	67.35
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	65.9	66.75
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	66.92	66.58
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	66.41	65.9
Os08t0242900-01	Rice	nucleus	67.18	65.83
KRH38497	Soybean	cytosol	13.33	63.41
KRH13062	Soybean	cytosol	19.23	60.48
Bra020441.1-P	Field mustard	cytosol	13.08	53.68
HORVU7Hr1G060410.1	Barley	cytosol	8.46	50.77

Protein Annotations

EnsemblPlants:Bra038553.1	EnsemblPlants:Bra038553.1-P	EnsemblPlantsGene:Bra038553	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005875	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736	PANTHER:PTHR21736:SF12
PFAM:PF11559	SEG:seg	UniParc:UPI0002541FBD	UniProt:M4FBT7	MapMan:35.2	:

Description

AT2G18876 (E=8e-173) | unknown protein

Coordinates

chrA09:+:5260727..5263237

Molecular Weight (calculated)

44803.3 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.717

Length

390 amino acids

Sequence
(BLAST)

001: MSFTAPEFDY RVTTSSLSYS LTSLQFSLSL RLIVFASSYA VWEEHSFADV DNLEHCVKYL NQSLVTYGFS ASLDLFATDP VSIARTCNCI YALIQQRQRD
101: VEFRESTNDQ RLRLLSDMAR LEAKVERLEN QLQSKERELG SVTRTEAKNT AALKAQNEKL QKERDEFQRM VIANQQVKTQ QLHETKKKEK EYIKLQERLN
201: QVLMEKKKET RSGMEIMNLL QKEGRQRGTW TGKKTDSDFY KKIVDAYEAK NQELMAENTD LRALLRSTQG DMRSFLNANG RTSLDPSQSP LGGKTDVFDL
301: PFRMARGQIE DSLRSKMVSI KERMGQLVDA QKEVTITSEA SERELELEAQ LVEARSIIQE QESIMSKHLP KTDRRRNSAP PPQSLSGLRG

Best Arabidopsis Sequence Match ( AT2G18876.1 )
(BLAST)

001: MSLTVPEFDF RLTPQFGFSQ SPIGERNFAD VDNLENCIKY LNQSLVTSGF SASLDLFATD PVSIARTCNC VYALIQQRQR DVEFRESAND QRQRLLSDMA
101: RLEAKVERLE TQLQAKEREL GSVTRTEAKN TAALKTQNEK LQKERDEFQR MVIANQQVKT QQLHETKKKE KEYIKLQERL NQVLMEKKKE TRSGMEIMNL
201: LQKEGRQRGT WSGKKTDSDF YKKIVDAYEA KNQELMAENT DLRALLRSTQ GDMRSFLNAS GGLTNQSLVA NGRHGADPSQ SPLGGKTDVF DLPFRMARGQ
301: IEDSLRSKMV SIKERMGQLV DAQKEVSITS EASERELELE AQLVEARSII QEQESIMSKH LPKTDRRRNS APPHSSVNGL RG

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:Q8GW47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.