CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68022
CDX79255
CDX87455
CDX88436
CDX91676
CDY00447
CDY14618
CDY30300
CDY41483
CDY46646
CDY52581
CDY52582

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18876.1	CDX68022	AT1G78300.1	21798944
AT2G18876.1	CDX79255	AT1G78300.1	21798944
AT2G18876.1	CDX87455	AT1G78300.1	21798944
AT2G18876.1	CDX88436	AT1G78300.1	21798944
AT2G18876.1	CDX91676	AT1G78300.1	21798944
AT2G18876.1	CDY00447	AT1G78300.1	21798944
AT2G18876.1	CDY14618	AT1G78300.1	21798944
AT2G18876.1	CDY41483	AT1G78300.1	21798944
AT2G18876.1	CDY46646	AT1G78300.1	21798944
AT2G18876.1	CDY30300	AT2G18876.1	21798944
AT2G18876.1	CDY52581	AT2G18876.1	21798944
AT2G18876.1	CDY52582	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52581	Canola	nucleus	90.72	96.17
Bra038553.1-P	Field mustard	nucleus	93.04	92.56
AT2G18876.1	Thale cress	cytosol	86.34	87.7
CDY52582	Canola	nucleus	14.69	80.28
KRH02865	Soybean	cytosol	73.71	75.66
KRH19028	Soybean	cytosol	73.2	75.13
VIT_11s0052g00890.t01	Wine grape	cytosol	72.68	73.82
CDX88621	Canola	cytosol	70.1	73.32
CDY11870	Canola	cytosol	69.85	73.05
Solyc07g019530.2.1	Tomato	cytosol	69.59	69.59
GSMUA_Achr7P05020_001	Banana	cytosol	67.53	69.5
GSMUA_Achr4P20560_001	Banana	cytosol	68.04	68.39
HORVU7Hr1G060360.1	Barley	plastid	59.02	67.95
KXG24799	Sorghum	mitochondrion, plastid	68.04	67.87
Zm00001d050216_P003	Maize	plastid	67.78	67.61
TraesCS7A01G292000.1	Wheat	cytosol, nucleus, plastid	66.49	67.01
TraesCS7D01G288000.2	Wheat	cytosol, nucleus, plastid	67.01	66.33
Os08t0242900-01	Rice	nucleus	67.53	65.83
TraesCS7B01G183000.7	Wheat	cytosol, nucleus, plastid	66.24	65.39
KRH38497	Soybean	cytosol	13.14	62.2
KRH13062	Soybean	cytosol	19.33	60.48
HORVU7Hr1G060410.1	Barley	cytosol	8.25	49.23
CDY61500	Canola	cytosol	14.43	38.36

Protein Annotations

EnsemblPlants:CDY30300	EnsemblPlantsGene:GSBRNA2T00044967001	InterPro:Afadin/alpha-actinin-bd	ncoils:Coil	PANTHER:PTHR21736	PANTHER:PTHR21736:SF12
PFAM:PF11559	ProteinID:CDY30300	ProteinID:CDY30300.1	SEG:seg	UniParc:UPI0004EEF0C4	UniProt:A0A078GUW4
MapMan:35.2	:	:	:	:	:

Description

BnaA09g09770DBnaA09g09770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUW4]

Coordinates

chrLK032252:-:72808..75628

Molecular Weight (calculated)

44650.1 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.781

Length

388 amino acids

Sequence
(BLAST)

001: MSFTAPEFDY RVTTSSLSLS ITHESPILSL SKSHFWFLND REHSFADVDN LEHCVKYLNQ SLVTYGFSAS LDLFATDPVS IARTCNCIYA LIQQRQRDVE
101: FRESTNDQRL RLLSDMARLE AKVERLENQL QSKERELGSV TRTEAKNTAA LKAQNEKLQK ERDEFQRMVI ANQQVKTQQL HETKKKEKEY IKLQERLNQV
201: LMEKKKETRS GMEIMNLLQK EGRQRGTWTG KKTDSDFYKK IVDAYEAKNQ ELMAENTDLR ALLRSTQGDM RSFLNANGRT SLDPSQSPLG GKTDVFDLPF
301: RMARGQIEDS LRSKMVSIKE RMGQLVDAQK EVTITSEASE RELELEAQLV EARSIIQEQE SIMSKHLPKT DRRRNSAPPP QSLSGLRG

Best Arabidopsis Sequence Match ( AT2G18876.1 )
(BLAST)

001: MSLTVPEFDF RLTPQFGFSQ SPIGERNFAD VDNLENCIKY LNQSLVTSGF SASLDLFATD PVSIARTCNC VYALIQQRQR DVEFRESAND QRQRLLSDMA
101: RLEAKVERLE TQLQAKEREL GSVTRTEAKN TAALKTQNEK LQKERDEFQR MVIANQQVKT QQLHETKKKE KEYIKLQERL NQVLMEKKKE TRSGMEIMNL
201: LQKEGRQRGT WSGKKTDSDF YKKIVDAYEA KNQELMAENT DLRALLRSTQ GDMRSFLNAS GGLTNQSLVA NGRHGADPSQ SPLGGKTDVF DLPFRMARGQ
301: IEDSLRSKMV SIKERMGQLV DAQKEVSITS EASERELELE AQLVEARSII QEQESIMSKH LPKTDRRRNS APPHSSVNGL RG

Arabidopsis Description

Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:Q8GW47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.