Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g012120.2.1 | |
| Solyc07g019530.2.1 | |
| Solyc11g010200.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G18876.1 | Solyc04g012120.2.1 | AT1G78300.1 | 21798944 |
| AT2G18876.1 | Solyc11g010200.1.1 | AT1G78300.1 | 21798944 |
| AT2G18876.1 | Solyc07g019530.2.1 | AT2G18876.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0052g00890.t01 | Wine grape | cytosol | 82.73 | 84.03 |
| KRH02865 | Soybean | cytosol | 78.87 | 80.95 |
| KRH19028 | Soybean | cytosol | 78.35 | 80.42 |
| GSMUA_Achr7P05020_001 | Banana | cytosol | 76.8 | 79.05 |
| Bra006821.1-P | Field mustard | cytosol | 72.94 | 77.96 |
| CDX88621 | Canola | cytosol | 73.97 | 77.36 |
| CDY11870 | Canola | cytosol | 73.71 | 77.09 |
| GSMUA_Achr4P20560_001 | Banana | cytosol | 76.29 | 76.68 |
| KXG24799 | Sorghum | mitochondrion, plastid | 75.52 | 75.32 |
| Zm00001d050216_P003 | Maize | plastid | 75.0 | 74.81 |
| TraesCS7D01G288000.2 | Wheat | cytosol, nucleus, plastid | 75.0 | 74.23 |
| HORVU7Hr1G060360.1 | Barley | plastid | 64.43 | 74.18 |
| TraesCS7A01G292000.1 | Wheat | cytosol, nucleus, plastid | 73.45 | 74.03 |
| AT5G57410.3 | Thale cress | cytosol | 74.23 | 73.66 |
| CDY52581 | Canola | nucleus | 69.33 | 73.5 |
| Os08t0242900-01 | Rice | nucleus | 75.26 | 73.37 |
| TraesCS7B01G183000.7 | Wheat | cytosol, nucleus, plastid | 73.97 | 73.03 |
| AT2G18876.1 | Thale cress | cytosol | 70.1 | 71.2 |
| CDY30300 | Canola | nucleus | 69.59 | 69.59 |
| Bra038553.1-P | Field mustard | nucleus | 69.85 | 69.49 |
| KRH13062 | Soybean | cytosol | 22.16 | 69.35 |
| KRH38497 | Soybean | cytosol | 13.92 | 65.85 |
| CDY52582 | Canola | nucleus | 11.6 | 63.38 |
| Bra020441.1-P | Field mustard | cytosol | 15.21 | 62.11 |
| HORVU7Hr1G060410.1 | Barley | cytosol | 9.79 | 58.46 |
| CDY61500 | Canola | cytosol | 14.95 | 39.73 |
Protein Annotations
| EnsemblPlants:Solyc07g019530.2.1 | EnsemblPlantsGene:Solyc07g019530.2 | InterPro:Afadin/alpha-actinin-bd | ncoils:Coil | PANTHER:PTHR21736 | PANTHER:PTHR21736:SF12 |
| PFAM:PF11559 | SEG:seg | UniParc:UPI000276C5AE | UniProt:K4CCR5 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr7:+:11870847..11881688
Molecular Weight (calculated)
44543.9 Da
IEP (calculated)
6.541
GRAVY (calculated)
-0.854
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPTDNDYDL RRASTPPSGM GISECNFADI NNLEHCAKYL NQTLVTFGFP ASLDLFAHDP VSIARTCNCV YALLQQRQRD IEFRESTNEQ RQRLLSDISR
101: LEAKVERLES QLQVKDREIA TITREEAKAT AALKAQIDKL QKERDEFQRM VLGNQQVRTQ QIYEMKKKEK EYIKLQERLN QVMMEKKKES RSGMEIMNLL
201: QKEGRQRGTW NGKKTDNDFY KKIVDAYEAK NQELAAENAD LRALLRSMQA DMREFLNAPN GSSRQSSSTS ERLDTDHLQS PLGGRTDVFD LPLHMARDQI
301: EESLRNKMAS IKERMGQLQD AQKGAEVTSE ATERELELEA QLVEARSIIQ EQASIMSKHL TKSEKPRRLS GHMNSERDLL ISSPTEGL
101: LEAKVERLES QLQVKDREIA TITREEAKAT AALKAQIDKL QKERDEFQRM VLGNQQVRTQ QIYEMKKKEK EYIKLQERLN QVMMEKKKES RSGMEIMNLL
201: QKEGRQRGTW NGKKTDNDFY KKIVDAYEAK NQELAAENAD LRALLRSMQA DMREFLNAPN GSSRQSSSTS ERLDTDHLQS PLGGRTDVFD LPLHMARDQI
301: EESLRNKMAS IKERMGQLQD AQKGAEVTSE ATERELELEA QLVEARSIIQ EQASIMSKHL TKSEKPRRLS GHMNSERDLL ISSPTEGL
001: MPANDAEYDL KVLSQSASAG DYTFANEDNL EHCTKYLNQT MVTFGFPASL DLFSNDPVSI SRTCNCMYSL LQQRQRDIEF RESANELRQR QQSDIARLEA
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGV
101: KVERLEALLQ QKDREIATIT RTEAKNTAAL KSQIEKLQQE RDEFQRMVIG NQQVKAQQIH EMKKKEKDYI KLQERLNQVL MEKKKESRSG MEIMNLLQKE
201: GRQRGTWNGK KTDTDFYKKI VDAYEAKNQE LMAENTSLRA LLRSMQTDMR DFLNAPNGSA TLAGSEKREA DPSQSPLGGK TDVFDLPYRM ARGQIEESLR
301: TKMASIKESM VQLQDAPKRA SVTSEATERE LELEAQLVEA RSIIQEQESI MSKHLPKSEQ RRESVASLAA EGV
Arabidopsis Description
Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KAN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.