Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52581 | Canola | nucleus | 78.87 | 15.3 |
| CDY30300 | Canola | nucleus | 80.28 | 14.69 |
| AT2G18876.1 | Thale cress | cytosol | 78.87 | 14.66 |
| KRH19028 | Soybean | cytosol | 64.79 | 12.17 |
| KRH02865 | Soybean | cytosol | 64.79 | 12.17 |
| CDY61500 | Canola | cytosol | 23.94 | 11.64 |
| Solyc07g019530.2.1 | Tomato | cytosol | 63.38 | 11.6 |
| CDX88621 | Canola | cytosol | 60.56 | 11.59 |
| HORVU7Hr1G060360.1 | Barley | plastid | 54.93 | 11.57 |
| CDY11870 | Canola | cytosol | 59.15 | 11.32 |
| VIT_11s0052g00890.t01 | Wine grape | cytosol | 60.56 | 11.26 |
| GSMUA_Achr7P05020_001 | Banana | cytosol | 57.75 | 10.88 |
| GSMUA_Achr4P20560_001 | Banana | cytosol | 56.34 | 10.36 |
| TraesCS7A01G292000.1 | Wheat | cytosol, nucleus, plastid | 54.93 | 10.13 |
| Os08t0242900-01 | Rice | nucleus | 56.34 | 10.05 |
| KXG24799 | Sorghum | mitochondrion, plastid | 54.93 | 10.03 |
| TraesCS7D01G288000.2 | Wheat | cytosol, nucleus, plastid | 54.93 | 9.95 |
| TraesCS7B01G183000.7 | Wheat | cytosol, nucleus, plastid | 54.93 | 9.92 |
| Zm00001d050216_P003 | Maize | plastid | 53.52 | 9.77 |
| KRH38497 | Soybean | cytosol | 0.0 | 0.0 |
| KRH13062 | Soybean | cytosol | 0.0 | 0.0 |
| HORVU7Hr1G060410.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY52582 | EnsemblPlantsGene:GSBRNA2T00007349001 | ProteinID:CDY52582 | ProteinID:CDY52582.1 | SEG:seg | UniParc:UPI0004EE6276 |
| UniProt:A0A078IRI6 | MapMan:35.2 | : | : | : | : |
Description
BnaCnng22670DBnaCnng22670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRI6]
Coordinates
chrLK033105:+:39332..39632
Molecular Weight (calculated)
8036.6 Da
IEP (calculated)
5.872
GRAVY (calculated)
-0.883
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: MKERMGQLVD AQKEVTITSE ASERELELEA QLVETRSIIQ EQESIMSKHL PKTDRRRNSA PPSQSLSGLR G
001: MARLEAKVER LETQLQAKER ELGSVTRTEA KNTAALKTQN EKLQKERDEF QRMVIANQQV KTQQLHETKK KEKEYIKLQE RLNQVLMEKK KETRSGMEIM
101: NLLQKEGRQR GTWSGKKTDS DFYKKIVDAY EAKNQELMAE NTDLRALLRS TQGDMRSFLN ASGGLTNQSL VANGRHGADP SQSPLGGKTD VFDLPFRMAR
201: GQIEDSLRSK MVSIKERMGQ LVDAQKEVSI TSEASERELE LEAQLVEARS IIQEQESIMS KHLPKTDRRR NSAPPHSSVN GLRG
101: NLLQKEGRQR GTWSGKKTDS DFYKKIVDAY EAKNQELMAE NTDLRALLRS TQGDMRSFLN ASGGLTNQSL VANGRHGADP SQSPLGGKTD VFDLPFRMAR
201: GQIEDSLRSK MVSIKERMGQ LVDAQKEVSI TSEASERELE LEAQLVEARS IIQEQESIMS KHLPKTDRRR NSAPPHSSVN GLRG
Arabidopsis Description
Afadin/alpha-actinin-binding protein [Source:UniProtKB/TrEMBL;Acc:Q8GW47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.