CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94206
KRG94991
KRH02865
KRH13062
KRH19028
KRH38497
KRH57716
KRH64894

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38480.1	KRH02865	AT2G18876.1	21798944
AT5G38480.1	KRH13062	AT2G18876.1	21798944
AT5G38480.1	KRH19028	AT2G18876.1	21798944
AT5G38480.1	KRH38497	AT2G18876.1	21798944
AT5G38480.1	KRG94206	AT3G56850.1	21798944
AT5G38480.1	KRG94991	AT3G56850.1	21798944
AT5G38480.1	KRH57716	AT3G56850.1	21798944
AT5G38480.1	KRH64894	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01783	Soybean	nucleus	91.15	92.22
VIT_14s0006g03230.t01	Wine grape	cytosol	86.92	86.26
PGSC0003DMT400050389	Potato	cytosol	85.77	85.77
Solyc03g034180.2.1	Tomato	cytosol	84.23	84.88
Solyc02g063070.2.1	Tomato	plastid	84.62	84.62
PGSC0003DMT400062153	Potato	cytosol	84.62	84.62
CDX67405	Canola	cytosol	83.85	84.5
AT5G38480.1	Thale cress	cytosol	82.69	84.31
Bra028409.1-P	Field mustard	cytosol	83.46	84.11
Bra028187.1-P	Field mustard	cytosol	83.08	84.05
CDX74521	Canola	cytosol	83.08	84.05
CDY71290	Canola	cytosol	83.08	84.05
Bra040592.1-P	Field mustard	cytosol	84.23	83.91
CDY51543	Canola	cytosol	84.23	83.91
CDY01659	Canola	cytosol	82.69	83.66
CDY28698	Canola	cytosol	83.85	83.52
CDX91996	Canola	cytosol	83.46	83.14
Bra001049.1-P	Field mustard	cytosol	83.08	82.76
GSMUA_AchrUn_...	Banana	cytosol	41.54	82.44
CDX74252	Canola	cytosol	82.69	82.38
AT3G02520.2	Thale cress	cytosol	83.85	82.26
AT5G16050.2	Thale cress	cytosol	84.62	82.09
Os03t0710800-01	Rice	nucleus, plasma membrane	81.54	81.54
GSMUA_AchrUn_...	Banana	cytosol	41.15	81.06
TraesCS4B01G045500.2	Wheat	cytosol	81.15	80.84
TraesCS4A01G268700.1	Wheat	cytosol	81.15	80.84
TraesCS4D01G046400.2	Wheat	golgi	81.15	80.84
HORVU4Hr1G007370.1	Barley	plasma membrane	81.15	80.84
GSMUA_Achr5P23090_001	Banana	cytosol	40.38	79.55
KRH72385	Soybean	endoplasmic reticulum, nucleus	79.62	79.01
OQU83613	Sorghum	cytosol	78.85	77.07
KRH53025	Soybean	cytosol	81.92	76.34
TraesCS4D01G155900.1	Wheat	plastid	78.08	76.32
Os11t0546900-01	Rice	plasma membrane	77.69	76.23
Zm00001d053090_P001	Maize	plastid	78.46	76.12
TraesCS4A01G151000.2	Wheat	cytosol	78.08	75.19
TraesCS4B01G159900.1	Wheat	cytosol	78.46	74.73
Zm00001d007446_P003	Maize	cytosol	78.46	73.91
KRH62315	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	80.77	72.92
KRH52909	Soybean	endoplasmic reticulum	69.23	72.0
KRH62193	Soybean	endoplasmic reticulum	69.23	72.0
Zm00001d048554_P001	Maize	cytosol	53.46	70.56
KRH27042	Soybean	nucleus	69.23	68.97
HORVU4Hr1G043300.1	Barley	cytosol	79.23	68.67
KRH22287	Soybean	nucleus, plasma membrane	68.85	68.58
KRH42856	Soybean	nucleus	68.08	68.34
KRH58958	Soybean	endoplasmic reticulum	68.08	68.34
KRH75027	Soybean	endoplasmic reticulum	68.08	68.34
KRH70879	Soybean	endoplasmic reticulum	67.69	67.95
Zm00001d021885_P001	Maize	mitochondrion	42.69	67.27
KRH50527	Soybean	cytosol	66.54	66.8
Zm00001d033357_P001	Maize	cytosol	53.46	66.51
KRH16772	Soybean	cytosol	80.0	66.24
KRG89486	Soybean	cytosol	66.15	66.15
Zm00001d007968_P001	Maize	cytosol	52.69	65.55
Zm00001d017434_P001	Maize	cytosol	52.69	65.55
KRH21981	Soybean	cytosol	65.38	64.64
KRH27339	Soybean	cytosol	65.0	63.77
KRG89721	Soybean	cytosol	16.54	61.43
KRH05108	Soybean	cytosol	35.77	58.49
HORVU4Hr1G031770.1	Barley	cytosol, plastid	35.0	53.22
Zm00001d018856_P001	Maize	cytosol, plastid	58.08	50.0
Zm00001d039042_P001	Maize	cytosol, nucleus, plasma membrane, plastid	60.0	38.33

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
EMBL:ACUP02005367	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G363800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0019904	UniProt:I1KZK0	InterPro:IPR036815
EnsemblPlants:KRH46909	ProteinID:KRH46909	ProteinID:KRH46909.1	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305
ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF36	SMART:SM00101	SUPFAM:SSF48445
TMHMM:TMhelix	UniParc:UPI00023CA530	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:47528831..47530290

Molecular Weight (calculated)

29386.1 Da

IEP (calculated)

4.517

GRAVY (calculated)

-0.159

Length

260 amino acids

Sequence
(BLAST)

001: MADSSREENV YMAKLAEQAE RYEEMVEFME KVAKTVEVEE LTVEERNLLS VAYKNVIGAR RASWRIISSI EQKEESRGNE DHVAIIKEYR GKIEAELSKI
101: CDGILNLLES NLIPSAASPE SKVFYLKMKG DYHRYLAEFK TGAERKEAAE STLLAYKSAQ DIALADLAPT HPIRLGLALN FSVFYYEILN SPDRACNLAK
201: QAFDEAISEL DTLGEESYKD STLIMQLLRD NLTLWTSDIT VSFSLSISLL LYIVNISLCV

Best Arabidopsis Sequence Match ( AT3G02520.2 )
(BLAST)

001: MSSSREENVY LAKLAEQAER YEEMVEFMEK VAKTVDTDEL TVEERNLLSV AYKNVIGARR ASWRIISSIE QKEESRGNDD HVSIIKDYRG KIETELSKIC
101: DGILNLLDSH LVPTASLAES KVFYLKMKGD YHRYLAEFKT GAERKEAAES TLVAYKSAQD IALADLAPTH PIRLGLALNF SVFYYEILNS PDRACSLAKQ
201: AFDEAISELD TLGEESYKDS TLIMQLLRDN LTLWNSDIND EAGGDEIKEA SKHEPEEGKP AETGQ

Arabidopsis Description

GRF714-3-3-like protein GF14 nu [Source:UniProtKB/Swiss-Prot;Acc:Q96300]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.