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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, mitochondrion, nucleus, plasma membrane
Any Predictor:cytosol, golgi, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:golgi
YLoc:cytosol
 plasma membrane: 19658398
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 28499913
msms PMID: 19658398 doi
S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_18s0001g06330.t01 Wine grape extracellular 85.76 95.0
VIT_07s0191g00090.t01 Wine grape cytosol 81.6 92.16
KRH72385 Soybean endoplasmic reticulum, nucleus 83.68 91.98
KRH53025 Soybean cytosol 84.38 87.1
KRH01783 Soybean nucleus 75.69 84.82
KRH46909 Soybean cytosol 72.92 80.77
KRH16772 Soybean cytosol 84.03 77.07
KRH62193 Soybean endoplasmic reticulum 64.93 74.8
KRH52909 Soybean endoplasmic reticulum 63.89 73.6
KRH70879 Soybean endoplasmic reticulum 62.85 69.88
KRH75027 Soybean endoplasmic reticulum 62.5 69.5
KRH58958 Soybean endoplasmic reticulum 62.15 69.11
KRG89486 Soybean cytosol 62.15 68.85
KRH42856 Soybean nucleus 61.81 68.73
KRH22287 Soybean nucleus, plasma membrane 62.15 68.58
KRH27042 Soybean nucleus 62.15 68.58
KRH50527 Soybean cytosol 61.46 68.34
KRH21981 Soybean cytosol 60.76 66.54
KRH05108 Soybean cytosol 36.11 65.41
KRH27339 Soybean cytosol 59.72 64.91
KRG89721 Soybean cytosol 14.93 61.43
Protein Annotations
Gene3D:1.20.190.20InterPro:14-3-3InterPro:14-3-3_CSInterPro:14-3-3_dom_sfInterPro:14-3-3_domainMapMan:35.1
EMBL:ACUP02002234ncoils:CoilEnsemblPlantsGene:GLYMA_04G099900GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0019904UniProt:I1JVB9InterPro:IPR036815EnsemblPlants:KRH62315ProteinID:KRH62315ProteinID:KRH62315.1
PFAM:PF00244PIRSF:PIRSF000868PRINTS:PR00305ScanProsite:PS00796ScanProsite:PS00797PANTHER:PTHR18860
PANTHER:PTHR18860:SF26SMART:SM00101SUPFAM:SSF48445UniParc:UPI00023BF4B0SEG:seg:
Description
hypothetical protein
Coordinates
chr4:-:9132954..9135203
Molecular Weight (calculated)
32434.2 Da
IEP (calculated)
4.397
GRAVY (calculated)
-0.311
Length
288 amino acids
Sequence
(BLAST)
001: MAAAPSPREE NVYMAKLAEQ AERYEEMVEF MEKVSAAADN EELTVEERNL LSVAYKNVIG ARRASWRIIS SIEQKEESRG NEDHVSVIRD YRSKIESELS
101: NICDGILKLL DSRLIPSASS GDSKVFYLKM KGDYHRYLAE FKTGAERKEA AESTLSAYKA AQDIANAELP PTHPIRLGLA LNFSVFYYEI LNSPDRACNL
201: AKQAFDEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQVLILGCHS SSITSFFISL FCVVDLLLWF QDDGADEIKE AAPKQDDQ
Best Arabidopsis Sequence Match ( AT1G35160.2 )
(BLAST)
001: MAAPPASSSA REEFVYLAKL AEQAERYEEM VEFMEKVAEA VDKDELTVEE RNLLSVAYKN VIGARRASWR IISSIEQKEE SRGNDDHVTT IRDYRSKIES
101: ELSKICDGIL KLLDTRLVPA SANGDSKVFY LKMKGDYHRY LAEFKTGQER KDAAEHTLTA YKAAQDIANA ELAPTHPIRL GLALNFSVFY YEILNSPDRA
201: CNLAKQAFDE AIAELDTLGE ESYKDSTLIM QLLRDNLTLW TSDMQFCIMY DNTLMSFLVL ISDSVVLIST INQDESPEEI KEAAAPKPAE EQKEI
Arabidopsis Description
GF14 PHIGF14 protein phi chain [Source:UniProtKB/TrEMBL;Acc:F4HWQ5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.