CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27042	Soybean	nucleus	98.08	98.08
KRH42856	Soybean	nucleus	82.76	83.4
KRH58958	Soybean	endoplasmic reticulum	81.23	81.85
KRG89721	Soybean	cytosol	21.84	81.43
VIT_19s0014g01420.t01	Wine grape	cytosol	81.61	80.68
Bra000268.1-P	Field mustard	cytosol	79.69	79.39
AT2G42590.3	Thale cress	cytosol	82.76	78.26
KRH27339	Soybean	cytosol	78.54	77.36
CDY61201	Canola	cytosol	80.08	76.84
KRH21981	Soybean	cytosol	77.39	76.81
KRH75027	Soybean	endoplasmic reticulum	75.86	76.45
CDY42826	Canola	cytosol	79.31	76.38
VIT_10s0003g01240.t01	Wine grape	cytosol	83.14	75.87
KRH50527	Soybean	cytosol	75.1	75.68
KRH70879	Soybean	endoplasmic reticulum	74.71	75.29
KRG89486	Soybean	cytosol	74.71	75.0
KRH01783	Soybean	nucleus	69.73	70.82
KRH46909	Soybean	cytosol	68.58	68.85
KRH72385	Soybean	endoplasmic reticulum, nucleus	67.43	67.18
KRH62193	Soybean	endoplasmic reticulum	61.3	64.0
KRH52909	Soybean	endoplasmic reticulum	60.92	63.6
KRH53025	Soybean	cytosol	67.05	62.72
KRH62315	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	68.58	62.15
KRH16772	Soybean	cytosol	67.82	56.37
KRH05108	Soybean	cytosol	27.2	44.65

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
EntrezGene:547990	UniProt:A0A0R0H7R6	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G290900	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815	EnsemblPlants:KRH22287	ProteinID:KRH22287	ProteinID:KRH22287.1
PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860
PANTHER:PTHR18860:SF31	UniProt:Q96453	SMART:SM00101	SUPFAM:SSF48445	EMBL:U70536	UniParc:UPI0000124DFA
SEG:seg	:	:	:	:	:

Description

GF14Dhypothetical protein

Coordinates

chr13:+:39120795..39124124

Molecular Weight (calculated)

29519.6 Da

IEP (calculated)

4.476

GRAVY (calculated)

-0.570

Length

261 amino acids

Sequence
(BLAST)

001: MTASKDRENF VYIAKLAEQA ERYEEMVESM KNVANLDVEL TVEERNLLSV GYKNVIGARR ASWRILSSIE QKEETKGNEL NAKRIKEYRQ KVELELSNIC
101: NDVMRVIDEH LIPSAAAGES TVFYYKMKGD YYRYLAEFKS GNEKKEAADQ SMKAYESATA AAEADLPPTH PIRLGLALNF SVFYYEILNS PERACHLAKQ
201: AFDEAISELD TLNEESYKDS TLIMQLLRDN LTLWTSDIPE DGEDAQKVNG TAKLGGGEDA E

Best Arabidopsis Sequence Match ( AT2G42590.2 )
(BLAST)

001: MGSGKERDTF VYLAKLSEQA ERYEEMVESM KSVAKLNVDL TVEERNLLSV GYKNVIGSRR ASWRIFSSIE QKEAVKGNDV NVKRIKEYME KVELELSNIC
101: IDIMSVLDEH LIPSASEGES TVFFNKMKGD YYRYLAEFKS GNERKEAADQ SLKAYEIATT AAEAKLPPTH PIRLGLALNF SVFYYEIMNA PERACHLAKQ
201: AFDEAISELD TLNEESYKDS TLIMQLLRDN LTLWTSDISE EGDDAHKTNG SAKPGAGGDD AE

Arabidopsis Description

GRF9General regulatory factor 9 [Source:UniProtKB/TrEMBL;Acc:F4IP55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.