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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH52909 Soybean endoplasmic reticulum 97.2 97.2
Solyc04g076060.2.1 Tomato nucleus 84.4 83.73
PGSC0003DMT400033585 Potato cytosol 84.4 83.73
GSMUA_Achr3P06740_001 Banana cytosol 66.4 74.77
KRH01783 Soybean nucleus 72.4 70.43
KRH46909 Soybean cytosol 72.0 69.23
KRH72385 Soybean endoplasmic reticulum, nucleus 72.4 69.08
TraesCS7A01G295500.1 Wheat golgi 70.4 67.95
EES14338 Sorghum cytosol 70.4 67.95
TraesCS7D01G292400.1 Wheat cytosol 70.8 67.82
TraesCS7B01G183800.1 Wheat plastid 70.8 67.82
Os08t0480800-01 Rice plasma membrane 70.8 67.05
KRH53025 Soybean cytosol 74.4 66.67
KRH62315 Soybean endoplasmic reticulum, mitochondrion, nucleus, plasma membrane 74.8 64.93
Zm00001d052796_P003 Maize cytosol 69.2 64.31
KRH50527 Soybean cytosol 65.2 62.93
KRG89486 Soybean cytosol 64.8 62.31
KRH70879 Soybean endoplasmic reticulum 64.4 62.16
KRH75027 Soybean endoplasmic reticulum 64.4 62.16
KRH42856 Soybean nucleus 64.0 61.78
KRH27042 Soybean nucleus 64.0 61.3
KRH22287 Soybean nucleus, plasma membrane 64.0 61.3
KRH58958 Soybean endoplasmic reticulum 62.8 60.62
KRG89721 Soybean cytosol 16.8 60.0
Zm00001d006462_P001 Maize cytosol 34.8 58.39
KRH16772 Soybean cytosol 72.8 57.96
KRH21981 Soybean cytosol 59.6 56.65
KRH27339 Soybean cytosol 59.2 55.85
KRH05108 Soybean cytosol 33.2 52.2
Protein Annotations
Gene3D:1.20.190.20InterPro:14-3-3InterPro:14-3-3_CSInterPro:14-3-3_dom_sfInterPro:14-3-3_domainMapMan:35.1
EntrezGene:547890UniProt:A0A0R0K6A7EMBL:ACUP02002227ncoils:CoilEnsemblPlantsGene:GLYMA_04G092600GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0019904InterPro:IPR036815EnsemblPlants:KRH62193ProteinID:KRH62193
ProteinID:KRH62193.1PFAM:PF00244PIRSF:PIRSF000868PRINTS:PR00305ScanProsite:PS00796ScanProsite:PS00797
PANTHER:PTHR18860PANTHER:PTHR18860:SF27SMART:SM00101SUPFAM:SSF48445UniParc:UPI00018C7074:
Description
hypothetical protein
Coordinates
chr4:+:8158031..8160711
Molecular Weight (calculated)
28210.3 Da
IEP (calculated)
4.527
GRAVY (calculated)
-0.352
Length
250 amino acids
Sequence
(BLAST)
001: MAAAEGLNRE QYVYLAKLSE QAERYEEMVE FMQKVVVGST PASELTVEER NLLSVAYKNV IGSLRAAWRI VSSIEQKEEG RKNDDHVSLV KHYRSKVENE
101: LTQVCASILS LLDSNLVPSA SASESKVFYL KMKGDYHRYL AEFKVGDERK TATEDTMLSY KAAQDIASAD LPPTHPIRLG LALNFSVFYY EILNQSDKAC
201: AMAKQAFEEA IAELDTLGEE SYKDSTLIMQ LLRDNLTLWT SDVQDQLDEP
Best Arabidopsis Sequence Match ( AT5G10450.1 )
(BLAST)
001: MAATLGRDQY VYMAKLAEQA ERYEEMVQFM EQLVTGATPA EELTVEERNL LSVAYKNVIG SLRAAWRIVS SIEQKEESRK NDEHVSLVKD YRSKVESELS
101: SVCSGILKLL DSHLIPSAGA SESKVFYLKM KGDYHRYMAE FKSGDERKTA AEDTMLAYKA AQDIAAADMA PTHPIRLGLA LNFSVFYYEI LNSSDKACNM
201: AKQAFEEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQEQMDEA
Arabidopsis Description
GRF6G-box regulating factor 6 [Source:TAIR;Acc:AT5G10450]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.