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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
nucleus: 27291164
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH22287 Soybean nucleus, plasma membrane 98.08 98.08
KRH42856 Soybean nucleus 83.52 84.17
KRH58958 Soybean endoplasmic reticulum 81.61 82.24
VIT_19s0014g01420.t01 Wine grape cytosol 82.76 81.82
KRG89721 Soybean cytosol 21.84 81.43
Bra000268.1-P Field mustard cytosol 79.31 79.01
KRH27339 Soybean cytosol 79.31 78.11
AT2G42590.3 Thale cress cytosol 82.38 77.9
KRH21981 Soybean cytosol 78.16 77.57
VIT_10s0003g01240.t01 Wine grape cytosol 83.91 76.57
CDY61201 Canola cytosol 79.69 76.47
KRH75027 Soybean endoplasmic reticulum 75.86 76.45
CDY42826 Canola cytosol 78.93 76.01
KRH50527 Soybean cytosol 75.1 75.68
KRH70879 Soybean endoplasmic reticulum 74.71 75.29
KRG89486 Soybean cytosol 74.71 75.0
KRH01783 Soybean nucleus 69.73 70.82
KRH46909 Soybean cytosol 68.97 69.23
KRH72385 Soybean endoplasmic reticulum, nucleus 67.82 67.56
KRH62193 Soybean endoplasmic reticulum 61.3 64.0
KRH52909 Soybean endoplasmic reticulum 60.92 63.6
KRH53025 Soybean cytosol 67.43 63.08
KRH62315 Soybean endoplasmic reticulum, mitochondrion, nucleus, plasma membrane 68.58 62.15
KRH16772 Soybean cytosol 68.2 56.69
KRH05108 Soybean cytosol 27.59 45.28
Protein Annotations
Gene3D:1.20.190.20EntrezGene:100801348InterPro:14-3-3InterPro:14-3-3_CSInterPro:14-3-3_dom_sfInterPro:14-3-3_domain
MapMan:35.1UniProt:A0A0R0HF31EMBL:ACUP02007762ncoils:CoilEnsemblPlantsGene:GLYMA_12G210400GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0019904InterPro:IPR036815EnsemblPlants:KRH27042ProteinID:KRH27042
ProteinID:KRH27042.1PFAM:PF00244PIRSF:PIRSF000868PRINTS:PR00305ScanProsite:PS00796ScanProsite:PS00797
PANTHER:PTHR18860PANTHER:PTHR18860:SF31SMART:SM00101SUPFAM:SSF48445UniParc:UPI00018C7052:
Description
hypothetical protein
Coordinates
chr12:-:36943512..36946342
Molecular Weight (calculated)
29462.6 Da
IEP (calculated)
4.436
GRAVY (calculated)
-0.546
Length
261 amino acids
Sequence
(BLAST)
001: MAASKDRENF VYIAKLAEQA ERYEEMVESM KNVANLDVEL TVEERNLLSV GYKNVIGARR ASWRILSSIE QKEETKGNEL NAKRIKEYRQ KVELELSNIC
101: NDVMTVIDEH LIPSAAAGES TVFYYKMKGD YYRYLAEFKA GNEKKEAADQ SMKAYESATT AAEADLPPTH PIRLGLALNF SVFYYEILNS PERACHLAKQ
201: AFDEAISELD TLNEESYKDS TLIMQLLRDN LTLWTSDIPE DGEDAQKVNG TAKLGGGEEA E
Best Arabidopsis Sequence Match ( AT2G42590.2 )
(BLAST)
001: MGSGKERDTF VYLAKLSEQA ERYEEMVESM KSVAKLNVDL TVEERNLLSV GYKNVIGSRR ASWRIFSSIE QKEAVKGNDV NVKRIKEYME KVELELSNIC
101: IDIMSVLDEH LIPSASEGES TVFFNKMKGD YYRYLAEFKS GNERKEAADQ SLKAYEIATT AAEAKLPPTH PIRLGLALNF SVFYYEIMNA PERACHLAKQ
201: AFDEAISELD TLNEESYKDS TLIMQLLRDN LTLWTSDISE EGDDAHKTNG SAKPGAGGDD AE
Arabidopsis Description
GRF9General regulatory factor 9 [Source:UniProtKB/TrEMBL;Acc:F4IP55]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.