CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94206
KRG94991
KRH02865
KRH13062
KRH19028
KRH38497
KRH57716
KRH64894

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38480.1	KRH02865	AT2G18876.1	21798944
AT5G38480.1	KRH13062	AT2G18876.1	21798944
AT5G38480.1	KRH19028	AT2G18876.1	21798944
AT5G38480.1	KRH38497	AT2G18876.1	21798944
AT5G38480.1	KRG94206	AT3G56850.1	21798944
AT5G38480.1	KRG94991	AT3G56850.1	21798944
AT5G38480.1	KRH57716	AT3G56850.1	21798944
AT5G38480.1	KRH64894	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46909	Soybean	cytosol	92.22	91.15
VIT_14s0006g03230.t01	Wine grape	cytosol	92.61	90.84
Solyc03g034180.2.1	Tomato	cytosol	91.05	90.7
PGSC0003DMT400062153	Potato	cytosol	91.44	90.38
Solyc02g063070.2.1	Tomato	plastid	91.05	90.0
GSMUA_AchrUn_...	Banana	cytosol	45.53	89.31
GSMUA_Achr5P23090_001	Banana	cytosol	45.53	88.64
AT5G38480.1	Thale cress	cytosol	87.94	88.63
Bra040592.1-P	Field mustard	cytosol	89.88	88.51
CDY51543	Canola	cytosol	89.88	88.51
CDX67405	Canola	cytosol	88.72	88.37
Bra028187.1-P	Field mustard	cytosol	88.33	88.33
CDY71290	Canola	cytosol	88.33	88.33
CDX74521	Canola	cytosol	88.33	88.33
CDY28698	Canola	cytosol	89.49	88.12
Bra028409.1-P	Field mustard	cytosol	88.33	87.98
CDY01659	Canola	cytosol	87.94	87.94
GSMUA_AchrUn_...	Banana	cytosol	45.14	87.88
CDX91996	Canola	cytosol	88.72	87.36
Bra001049.1-P	Field mustard	cytosol	88.33	86.97
AT3G02520.2	Thale cress	cytosol	89.49	86.79
CDX74252	Canola	cytosol	87.94	86.59
AT5G16050.2	Thale cress	cytosol	88.33	84.7
PGSC0003DMT400050389	Potato	cytosol	85.6	84.62
Os03t0710800-01	Rice	nucleus, plasma membrane	85.6	84.62
TraesCS4A01G268700.1	Wheat	cytosol	84.82	83.52
TraesCS4B01G045500.2	Wheat	cytosol	84.82	83.52
TraesCS4D01G046400.2	Wheat	golgi	84.82	83.52
HORVU4Hr1G007370.1	Barley	plasma membrane	84.82	83.52
KRH72385	Soybean	endoplasmic reticulum, nucleus	83.27	81.68
OQU83613	Sorghum	cytosol	82.49	79.7
Os11t0546900-01	Rice	plasma membrane	82.1	79.62
Zm00001d053090_P001	Maize	plastid	82.49	79.1
TraesCS4D01G155900.1	Wheat	plastid	81.32	78.57
TraesCS4A01G151000.2	Wheat	cytosol	81.32	77.41
TraesCS4B01G159900.1	Wheat	cytosol	81.71	76.92
Zm00001d007446_P003	Maize	cytosol	81.71	76.09
KRH62315	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	84.82	75.69
KRH53025	Soybean	cytosol	81.71	75.27
KRH62193	Soybean	endoplasmic reticulum	70.43	72.4
KRH52909	Soybean	endoplasmic reticulum	70.43	72.4
Zm00001d048554_P001	Maize	cytosol	54.47	71.07
HORVU4Hr1G043300.1	Barley	cytosol	82.49	70.67
KRH75027	Soybean	endoplasmic reticulum	70.82	70.27
KRH27042	Soybean	nucleus	70.82	69.73
KRH22287	Soybean	nucleus, plasma membrane	70.82	69.73
KRH70879	Soybean	endoplasmic reticulum	70.04	69.5
KRH16772	Soybean	cytosol	83.27	68.15
KRH58958	Soybean	endoplasmic reticulum	68.48	67.95
KRH42856	Soybean	nucleus	68.09	67.57
KRH50527	Soybean	cytosol	68.09	67.57
KRG89486	Soybean	cytosol	67.7	66.92
Zm00001d021885_P001	Maize	mitochondrion	42.8	66.67
Zm00001d033357_P001	Maize	cytosol	54.09	66.51
Zm00001d007968_P001	Maize	cytosol	53.31	65.55
Zm00001d017434_P001	Maize	cytosol	53.31	65.55
KRH21981	Soybean	cytosol	65.76	64.26
KRH27339	Soybean	cytosol	65.76	63.77
KRG89721	Soybean	cytosol	16.73	61.43
KRH05108	Soybean	cytosol	35.41	57.23
HORVU4Hr1G031770.1	Barley	cytosol, plastid	35.41	53.22
Zm00001d018856_P001	Maize	cytosol, plastid	58.75	50.0
Zm00001d039042_P001	Maize	cytosol, nucleus, plasma membrane, plastid	59.53	37.59

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
EntrezGene:547889	EMBL:ACUP02011530	ncoils:Coil	UniProt:E9KNA6	EnsemblPlantsGene:GLYMA_18G298300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	EMBL:HM004359	InterPro:IPR036815	EnsemblPlants:KRH01783
ProteinID:KRH01783	ProteinID:KRH01783.1	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796
ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF36	SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI00019D33D4
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:57587135..57590454

Molecular Weight (calculated)

29065.2 Da

IEP (calculated)

4.403

GRAVY (calculated)

-0.463

Length

257 amino acids

Sequence
(BLAST)

001: MSDSSREENV YMAKLAEQAE RYEEMVEFME KVAKTVEVEE LTVEERNLLS VAYKNVIGAR RASWRIISSI EQKEESRGNE DHVAIIKEYR GKIEAELSKI
101: CDGILNLLES NLIPSAASPE SKVFYLKMKG DYHRYLAEFK TGAERKEAAE STLLAYKSAQ DIALADLAPT HPIRLGLALN FSVFYYEILN SPDRACNLAK
201: QAFDEAISEL DTLGEESYKD STLIMQLLRD NLTLWTSDIT DDAGDEIKET SKQQPGE

Best Arabidopsis Sequence Match ( AT3G02520.2 )
(BLAST)

001: MSSSREENVY LAKLAEQAER YEEMVEFMEK VAKTVDTDEL TVEERNLLSV AYKNVIGARR ASWRIISSIE QKEESRGNDD HVSIIKDYRG KIETELSKIC
101: DGILNLLDSH LVPTASLAES KVFYLKMKGD YHRYLAEFKT GAERKEAAES TLVAYKSAQD IALADLAPTH PIRLGLALNF SVFYYEILNS PDRACSLAKQ
201: AFDEAISELD TLGEESYKDS TLIMQLLRDN LTLWNSDIND EAGGDEIKEA SKHEPEEGKP AETGQ

Arabidopsis Description

GRF714-3-3-like protein GF14 nu [Source:UniProtKB/Swiss-Prot;Acc:Q96300]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.