Factsheet for Solyc03g034180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

cytosol: 30583044

nucleus: 25464976

gfp PMID: 30583044 doi

P Hloušková, M Černý, N Kořínková, M Luklová, EG Minguet, B Brzobohatý, P Galuszka, V Bergougnoux

Department of Molecular Biology, Centre of the Region Hana for Biotechnological and Agricultural Research, Palacky University in Olomouc, Šlechtitelu 27, 783 71 Olomouc, Czechia., Department of Molecular Biology, Centre of the Region Hana for Biotechnological and Agricultural Research, Palacky University in Olomouc, Šlechtitelu 27, 783 71 Olomouc, Czechia. Electronic address: veronique.bergougnoux@upol.cz., Instituto de Biología Molecular y Celular de Plantas (UPV-Consejo Superior de Investigaciones Científicas), Universidad Politécnica de Valencia, 46022, Valencia, Spain., Laboratory of Plant Molecular Biology, Institute of Biophysics AS CR and CEITEC-Central European Institute of Technology, Mendel University in Brno, Zemědělská 1, 613 00 Brno, Czechia.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g019530.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38480.1	Solyc07g019530.2.1	AT2G18876.1	21798944
AT5G38480.1	Solyc10g076920.1.1	AT3G56850.1	21798944
AT5G38480.1	Solyc10g081350.1.1	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g063070.2.1	Tomato	plastid	93.02	92.31
KRH01783	Soybean	nucleus	90.7	91.05
PGSC0003DMT400050389	Potato	cytosol	91.09	90.38
VIT_14s0006g03230.t01	Wine grape	cytosol	91.47	90.08
GSMUA_AchrUn_...	Banana	cytosol	45.35	89.31
GSMUA_Achr5P23090_001	Banana	cytosol	45.35	88.64
AT5G38480.1	Thale cress	cytosol	87.21	88.24
GSMUA_AchrUn_...	Banana	cytosol	44.96	87.88
CDY51543	Canola	cytosol	88.76	87.74
Bra040592.1-P	Field mustard	cytosol	88.76	87.74
CDX74521	Canola	cytosol	87.21	87.55
CDY71290	Canola	cytosol	87.21	87.55
Bra028187.1-P	Field mustard	cytosol	87.21	87.55
CDY28698	Canola	cytosol	88.37	87.36
CDY01659	Canola	cytosol	86.82	87.16
CDX67405	Canola	cytosol	86.82	86.82
Bra001049.1-P	Field mustard	cytosol	87.6	86.59
Os03t0710800-01	Rice	nucleus, plasma membrane	87.21	86.54
Bra028409.1-P	Field mustard	cytosol	86.43	86.43
CDX74252	Canola	cytosol	87.21	86.21
CDX91996	Canola	cytosol	86.82	85.82
AT3G02520.2	Thale cress	cytosol	87.6	85.28
TraesCS4A01G268700.1	Wheat	cytosol	86.05	85.06
TraesCS4D01G046400.2	Wheat	golgi	86.05	85.06
TraesCS4B01G045500.2	Wheat	cytosol	86.05	85.06
HORVU4Hr1G007370.1	Barley	plasma membrane	86.05	85.06
Solyc12g057110.2.1	Tomato	extracellular, nucleus	82.95	84.25
KRH46909	Soybean	cytosol	84.88	84.23
Solyc04g012120.2.1	Tomato	extracellular, nucleus	82.56	83.53
AT5G16050.2	Thale cress	cytosol	85.66	82.46
TraesCS4D01G155900.1	Wheat	plastid	82.95	80.45
OQU83613	Sorghum	cytosol	82.95	80.45
Zm00001d053090_P001	Maize	plastid	82.95	79.85
TraesCS4A01G151000.2	Wheat	cytosol	82.95	79.26
Os11t0546900-01	Rice	plasma membrane	81.4	79.25
Solyc04g074510.2.1	Tomato	extracellular, nucleus	82.17	79.1
TraesCS4B01G159900.1	Wheat	cytosol	83.33	78.75
Solyc11g010200.1.1	Tomato	nucleus	81.4	78.07
Zm00001d007446_P003	Maize	cytosol	82.17	76.81
HORVU4Hr1G043300.1	Barley	cytosol	84.11	72.33
Solyc11g010470.1.1	Tomato	extracellular, nucleus	69.77	72.29
Solyc04g076060.2.1	Tomato	nucleus	70.54	72.22
Zm00001d048554_P001	Maize	cytosol	54.26	71.07
Zm00001d021885_P001	Maize	mitochondrion	43.02	67.27
Solyc07g053260.2.1	Tomato	plastid	67.83	67.05
Zm00001d033357_P001	Maize	cytosol	54.26	66.99
Zm00001d007968_P001	Maize	cytosol	53.49	66.03
Zm00001d017434_P001	Maize	cytosol	53.49	66.03
Solyc04g074230.2.1	Tomato	extracellular	67.44	65.41
Solyc05g012420.2.1	Tomato	unclear	70.16	63.51
Solyc01g010360.2.1	Tomato	cytosol	67.44	63.5
Solyc12g010860.1.1	Tomato	plastid	62.4	61.69
HORVU4Hr1G031770.1	Barley	cytosol, plastid	35.27	53.22
Zm00001d018856_P001	Maize	cytosol, plastid	58.91	50.33
Zm00001d039042_P001	Maize	cytosol, nucleus, plasma membrane, plastid	59.69	37.84

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815
UniProt:K4BFU0	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF40	SMART:SM00101	SUPFAM:SSF48445	EnsemblPlantsGene:Solyc03g034180.2	EnsemblPlants:Solyc03g034180.2.1
UniParc:UPI0002767D89	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:5872975..5875083

Molecular Weight (calculated)

29124.1 Da

IEP (calculated)

4.409

GRAVY (calculated)

-0.492

Length

258 amino acids

Sequence
(BLAST)

001: MADSREENVY MAKLAEQAER YEEMVEFMEK VAKVDVEELT VEERNLLSVA YKNVIGARRA SWRIISSIEQ KEESRGNEDH VSSIKEYRAK IEAELSKICD
101: GILSLLESHL VPSASTAESK VFYLKMKGDY HRYLAEFKTG AERKEAAENT LLAYKSAQDI ALAELAPTHP IRLGLALNFS VFYYEILNSP DRACNLAKQA
201: FDDAIAELDT LGEESYKDST LIMQLLRDNL TLWTSDTTDD AGDEIREASK QESGDGQQ

Best Arabidopsis Sequence Match ( AT5G38480.1 )
(BLAST)

001: MSTREENVYM AKLAEQAERY EEMVEFMEKV AKTVDVEELS VEERNLLSVA YKNVIGARRA SWRIISSIEQ KEESKGNEDH VAIIKDYRGK IESELSKICD
101: GILNVLEAHL IPSASPAESK VFYLKMKGDY HRYLAEFKAG AERKEAAEST LVAYKSASDI ATAELAPTHP IRLGLALNFS VFYYEILNSP DRACSLAKQA
201: FDDAIAELDT LGEESYKDST LIMQLLRDNL TLWTSDMTDE AGDEIKEASK PDGAE

Arabidopsis Description

GRF3RCI1 [Source:UniProtKB/TrEMBL;Acc:A0A178UA42]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.