Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
22364583
nucleus: 25464976 unclear: 26455813 nucleus: 28394025 endoplasmic reticulum: 29145071 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079172 | Potato | cytosol | 91.79 | 94.98 |
| Solyc12g057110.2.1 | Tomato | extracellular, nucleus | 83.96 | 88.58 |
| Solyc04g012120.2.1 | Tomato | extracellular, nucleus | 80.97 | 85.1 |
| GSMUA_Achr6P10320_001 | Banana | cytosol | 39.93 | 82.95 |
| Solyc11g010200.1.1 | Tomato | nucleus | 82.84 | 82.53 |
| GSMUA_Achr10P... | Banana | cytosol | 63.06 | 82.44 |
| Solyc03g034180.2.1 | Tomato | cytosol | 79.1 | 82.17 |
| Solyc02g063070.2.1 | Tomato | plastid | 78.73 | 81.15 |
| Solyc11g010470.1.1 | Tomato | extracellular, nucleus | 69.78 | 75.1 |
| Solyc04g076060.2.1 | Tomato | nucleus | 68.28 | 72.62 |
| Solyc07g053260.2.1 | Tomato | plastid | 64.55 | 66.28 |
| Solyc04g074230.2.1 | Tomato | extracellular | 63.43 | 63.91 |
| Solyc01g010360.2.1 | Tomato | cytosol | 64.55 | 63.14 |
| Solyc05g012420.2.1 | Tomato | unclear | 66.79 | 62.81 |
| Solyc12g010860.1.1 | Tomato | plastid | 60.45 | 62.07 |
Protein Annotations
| Gene3D:1.20.190.20 | InterPro:14-3-3 | InterPro:14-3-3_CS | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain | MapMan:35.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0019904 | InterPro:IPR036815 |
| UniProt:K4BTY9 | PFAM:PF00244 | PIRSF:PIRSF000868 | PRINTS:PR00305 | ScanProsite:PS00796 | ScanProsite:PS00797 |
| PANTHER:PTHR18860 | PANTHER:PTHR18860:SF26 | SMART:SM00101 | SUPFAM:SSF48445 | EnsemblPlantsGene:Solyc04g074510.2 | EnsemblPlants:Solyc04g074510.2.1 |
| UniParc:UPI0002765644 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:60500769..60502930
Molecular Weight (calculated)
30441.6 Da
IEP (calculated)
5.153
GRAVY (calculated)
-0.353
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAPTAREE NVYMAKLAEQ AERYEEMVEF MEKVSNSLGS EELTVEERNL LSVAYKNVIG ARRASWRIIS SIEQKEESRG NEEHVNSIRE YRSKIENELS
101: KICDGILKLL DSKLIPSATS GDSKVFYLKM KGDYHRYLAE FKTGAERKEA AESTLTAYKA AQDIASAELA PTHPIRLGLA LNFSVFYYEI LNSPDRACNL
201: AKQAFDEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQVIIMIMMM VLMKSRKIPN LKKKIEGN
101: KICDGILKLL DSKLIPSATS GDSKVFYLKM KGDYHRYLAE FKTGAERKEA AESTLTAYKA AQDIASAELA PTHPIRLGLA LNFSVFYYEI LNSPDRACNL
201: AKQAFDEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQVIIMIMMM VLMKSRKIPN LKKKIEGN
001: MAAPPASSSA REEFVYLAKL AEQAERYEEM VEFMEKVAEA VDKDELTVEE RNLLSVAYKN VIGARRASWR IISSIEQKEE SRGNDDHVTT IRDYRSKIES
101: ELSKICDGIL KLLDTRLVPA SANGDSKVFY LKMKGDYHRY LAEFKTGQER KDAAEHTLTA YKAAQDIANA ELAPTHPIRL GLALNFSVFY YEILNSPDRA
201: CNLAKQAFDE AIAELDTLGE ESYKDSTLIM QLLRDNLTLW TSDMQFCIMY DNTLMSFLVL ISDSVVLIST INQDESPEEI KEAAAPKPAE EQKEI
101: ELSKICDGIL KLLDTRLVPA SANGDSKVFY LKMKGDYHRY LAEFKTGQER KDAAEHTLTA YKAAQDIANA ELAPTHPIRL GLALNFSVFY YEILNSPDRA
201: CNLAKQAFDE AIAELDTLGE ESYKDSTLIM QLLRDNLTLW TSDMQFCIMY DNTLMSFLVL ISDSVVLIST INQDESPEEI KEAAAPKPAE EQKEI
Arabidopsis Description
GF14 PHIGF14 protein phi chain [Source:UniProtKB/TrEMBL;Acc:F4HWQ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.