Factsheet for Solyc11g010470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041634	Potato	cytosol	100.0	100.0
VIT_18s0001g07240.t01	Wine grape	cytosol	87.15	86.11
CDX85759	Canola	cytosol	84.34	84.68
CDY40098	Canola	cytosol	84.34	84.68
CDY14562	Canola	cytosol	84.34	84.68
Bra024384.1-P	Field mustard	cytosol	84.34	84.68
Bra037818.1-P	Field mustard	cytosol	84.34	84.34
CDY54716	Canola	cytosol	84.34	84.34
CDY08794	Canola	cytosol	83.94	84.27
CDX81287	Canola	cytosol	83.94	83.94
VIT_00s0199g00190.t01	Wine grape	cytosol	84.74	83.4
CDX81179	Canola	cytosol	83.53	83.2
Solyc04g076060.2.1	Tomato	nucleus	83.94	82.94
CDX78381	Canola	cytosol	83.13	82.8
Bra006061.1-P	Field mustard	cytosol	83.13	82.47
CDX97016	Canola	cytosol	73.9	80.7
AT5G65430.3	Thale cress	cytosol	82.73	79.23
AT5G10450.4	Thale cress	cytosol	83.53	76.19
GSMUA_Achr3P06740_001	Banana	cytosol	67.47	75.68
Solyc12g057110.2.1	Tomato	extracellular, nucleus	77.11	75.59
Bra028586.1-P	Field mustard	cytosol	82.73	74.91
Solyc04g012120.2.1	Tomato	extracellular, nucleus	73.9	72.16
Solyc02g063070.2.1	Tomato	plastid	73.09	70.0
Solyc04g074510.2.1	Tomato	extracellular, nucleus	75.1	69.78
Solyc03g034180.2.1	Tomato	cytosol	72.29	69.77
Solyc11g010200.1.1	Tomato	nucleus	74.7	69.14
EES14338	Sorghum	cytosol	71.49	68.73
TraesCS7A01G295500.1	Wheat	golgi	70.68	67.95
Os08t0480800-01	Rice	plasma membrane	71.89	67.8
TraesCS7D01G292400.1	Wheat	cytosol	70.68	67.43
TraesCS7B01G183800.1	Wheat	plastid	70.68	67.43
Zm00001d052796_P003	Maize	cytosol	69.88	64.68
Solyc07g053260.2.1	Tomato	plastid	66.27	63.22
Zm00001d006462_P001	Maize	cytosol	35.74	59.73
Solyc04g074230.2.1	Tomato	extracellular	63.05	59.02
Solyc12g010860.1.1	Tomato	plastid	61.85	59.0
Solyc01g010360.2.1	Tomato	cytosol	64.26	58.39
Solyc05g012420.2.1	Tomato	unclear	65.86	57.54

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815
UniProt:K4D5K8	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF27	SMART:SM00101	SUPFAM:SSF48445	EnsemblPlantsGene:Solyc11g010470.1	EnsemblPlants:Solyc11g010470.1.1
UniParc:UPI00000A5E65	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:3533525..3537417

Molecular Weight (calculated)

28202.7 Da

IEP (calculated)

4.461

GRAVY (calculated)

-0.261

Length

249 amino acids

Sequence
(BLAST)

001: MALPENLTRE QCLYLAKLAE QAERYEEMVK FMDKLVIGSG SSELTVEERN LLSVAYKNVI GSLRAAWRIV SSIEQKEEGR KNDEHVVLVK DYRSKVESEL
101: SDVCAGILKI LDQYLIPSAS AGESKVFYLK MKGDYYRYLA EFKVGNERKE AAEDTMLAYK AAQDIAVAEL APTHPIRLGL ALNFSVFYYE ILNASEKACS
201: MAKQAFEEAI AELDTLGEES YKDSTLIMQL LRDNLTLWTS DMQEQMDEA

Best Arabidopsis Sequence Match ( AT5G65430.1 )
(BLAST)

001: MATTLSRDQY VYMAKLAEQA ERYEEMVQFM EQLVSGATPA GELTVEERNL LSVAYKNVIG SLRAAWRIVS SIEQKEESRK NEEHVSLVKD YRSKVETELS
101: SICSGILRLL DSHLIPSATA SESKVFYLKM KGDYHRYLAE FKSGDERKTA AEDTMIAYKA AQDVAVADLA PTHPIRLGLA LNFSVFYYEI LNSSEKACSM
201: AKQAFEEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQEQMDEA

Arabidopsis Description

GRF8General regulatory factor 8 [Source:UniProtKB/TrEMBL;Acc:F4KHY7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.