Factsheet for Solyc12g010860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020200	Potato	cytosol	97.32	98.07
Solyc07g053260.2.1	Tomato	plastid	85.82	85.82
KRH21981	Soybean	cytosol	77.01	76.43
KRH27339	Soybean	cytosol	76.25	75.09
Solyc04g074230.2.1	Tomato	extracellular	71.26	69.92
Solyc01g010360.2.1	Tomato	cytosol	71.65	68.25
Solyc05g012420.2.1	Tomato	unclear	73.18	67.02
Solyc12g057110.2.1	Tomato	extracellular, nucleus	62.45	64.17
Solyc04g012120.2.1	Tomato	extracellular, nucleus	61.69	63.14
Solyc02g063070.2.1	Tomato	plastid	62.45	62.69
Solyc03g034180.2.1	Tomato	cytosol	61.69	62.4
Solyc11g010470.1.1	Tomato	extracellular, nucleus	59.0	61.85
Solyc04g074510.2.1	Tomato	extracellular, nucleus	62.07	60.45
Solyc11g010200.1.1	Tomato	nucleus	62.07	60.22
GSMUA_Achr4P15130_001	Banana	cytosol	54.41	58.44
Solyc04g076060.2.1	Tomato	nucleus	55.56	57.54
Zm00001d035316_P001	Maize	cytosol	21.84	38.26

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815
UniProt:P93213	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF31	SMART:SM00101	SUPFAM:SSF48445	EnsemblPlantsGene:Solyc12g010860.1	EnsemblPlants:Solyc12g010860.1.1
UniParc:UPI0000124DEB	EMBL:X98864	SEG:seg	:	:	:

Description

TFT814-3-3 protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93213]

Coordinates

chr12:-:3781557..3784182

Molecular Weight (calculated)

29480.5 Da

IEP (calculated)

4.332

GRAVY (calculated)

-0.531

Length

261 amino acids

Sequence
(BLAST)

001: MASSKERESL VYIARLAEQA ERYDEMVDAM KNVANLDVEL TVEERNLLSV GYKNVVGSRR ASWRILSSIE QKEDARGNEQ NVKRIQGYRQ KVESELTDIC
101: NNIMTVIDEH LIPSCTAGES TVFYYKMKGD YYRYLAEFKT GDDKKEVSDL SLKAYQTATT TAEAELPITH PIRLGLALNF SVFYYEIMNS PERACQLAKQ
201: VFDEAISELD SLNEDNYKDG TLILQLLRDN LTLWTSDIPE DGEEAPKGDA ANKVGAGEDA E

Best Arabidopsis Sequence Match ( AT2G42590.2 )
(BLAST)

001: MGSGKERDTF VYLAKLSEQA ERYEEMVESM KSVAKLNVDL TVEERNLLSV GYKNVIGSRR ASWRIFSSIE QKEAVKGNDV NVKRIKEYME KVELELSNIC
101: IDIMSVLDEH LIPSASEGES TVFFNKMKGD YYRYLAEFKS GNERKEAADQ SLKAYEIATT AAEAKLPPTH PIRLGLALNF SVFYYEIMNA PERACHLAKQ
201: AFDEAISELD TLNEESYKDS TLIMQLLRDN LTLWTSDISE EGDDAHKTNG SAKPGAGGDD AE

Arabidopsis Description

GRF9General regulatory factor 9 [Source:UniProtKB/TrEMBL;Acc:F4IP55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.