Factsheet for Solyc02g063070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g019530.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38480.1	Solyc07g019530.2.1	AT2G18876.1	21798944
AT5G38480.1	Solyc10g076920.1.1	AT3G56850.1	21798944
AT5G38480.1	Solyc10g081350.1.1	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062153	Potato	cytosol	99.62	99.62
Solyc03g034180.2.1	Tomato	cytosol	92.31	93.02
KRH01783	Soybean	nucleus	90.0	91.05
GSMUA_Achr5P23090_001	Banana	cytosol	46.15	90.91
VIT_14s0006g03230.t01	Wine grape	cytosol	91.15	90.46
GSMUA_AchrUn_...	Banana	cytosol	44.62	88.55
GSMUA_AchrUn_...	Banana	cytosol	44.62	87.88
Bra040592.1-P	Field mustard	cytosol	87.69	87.36
CDY51543	Canola	cytosol	87.69	87.36
CDX91996	Canola	cytosol	87.31	86.97
Bra001049.1-P	Field mustard	cytosol	87.31	86.97
CDY28698	Canola	cytosol	87.31	86.97
CDX74252	Canola	cytosol	86.92	86.59
Bra028187.1-P	Field mustard	cytosol	85.38	86.38
CDX74521	Canola	cytosol	85.38	86.38
AT5G38480.1	Thale cress	cytosol	84.62	86.27
CDY71290	Canola	cytosol	85.0	85.99
CDY01659	Canola	cytosol	85.0	85.99
Os03t0710800-01	Rice	nucleus, plasma membrane	85.77	85.77
CDX67405	Canola	cytosol	85.0	85.66
Bra028409.1-P	Field mustard	cytosol	84.62	85.27
AT3G02520.2	Thale cress	cytosol	86.54	84.91
HORVU4Hr1G007370.1	Barley	plasma membrane	85.0	84.67
TraesCS4B01G045500.2	Wheat	cytosol	85.0	84.67
TraesCS4D01G046400.2	Wheat	golgi	85.0	84.67
TraesCS4A01G268700.1	Wheat	cytosol	85.0	84.67
KRH46909	Soybean	cytosol	84.62	84.62
Solyc12g057110.2.1	Tomato	extracellular, nucleus	82.31	84.25
Solyc04g012120.2.1	Tomato	extracellular, nucleus	81.92	83.53
AT5G16050.2	Thale cress	cytosol	85.77	83.21
TraesCS4D01G155900.1	Wheat	plastid	81.54	79.7
OQU83613	Sorghum	cytosol	81.54	79.7
Os11t0546900-01	Rice	plasma membrane	80.77	79.25
Zm00001d053090_P001	Maize	plastid	81.15	78.73
Solyc04g074510.2.1	Tomato	extracellular, nucleus	81.15	78.73
TraesCS4A01G151000.2	Wheat	cytosol	81.54	78.52
TraesCS4B01G159900.1	Wheat	cytosol	81.92	78.02
Solyc11g010200.1.1	Tomato	nucleus	80.38	77.7
Zm00001d007446_P003	Maize	cytosol	80.77	76.09
Solyc11g010470.1.1	Tomato	extracellular, nucleus	70.0	73.09
Solyc04g076060.2.1	Tomato	nucleus	70.38	72.62
HORVU4Hr1G043300.1	Barley	cytosol	81.92	71.0
Zm00001d048554_P001	Maize	cytosol	53.46	70.56
Solyc07g053260.2.1	Tomato	plastid	67.69	67.43
Zm00001d021885_P001	Maize	mitochondrion	41.92	66.06
Zm00001d033357_P001	Maize	cytosol	53.08	66.03
Zm00001d007968_P001	Maize	cytosol	52.31	65.07
Zm00001d017434_P001	Maize	cytosol	52.31	65.07
Solyc04g074230.2.1	Tomato	extracellular	66.15	64.66
Solyc01g010360.2.1	Tomato	cytosol	66.92	63.5
Solyc05g012420.2.1	Tomato	unclear	69.23	63.16
Solyc12g010860.1.1	Tomato	plastid	62.69	62.45
HORVU4Hr1G031770.1	Barley	cytosol, plastid	33.85	51.46
Zm00001d018856_P001	Maize	cytosol, plastid	57.31	49.34
Zm00001d039042_P001	Maize	cytosol, nucleus, plasma membrane, plastid	57.69	36.85

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
UniProt:A0A0J9YZP8	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904
InterPro:IPR036815	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF40	SMART:SM00101	SUPFAM:SSF48445	EnsemblPlantsGene:Solyc02g063070.2	EnsemblPlants:Solyc02g063070.2.1
UniParc:UPI000016DE1C	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:35114568..35121447

Molecular Weight (calculated)

29340.3 Da

IEP (calculated)

4.372

GRAVY (calculated)

-0.517

Length

260 amino acids

Sequence
(BLAST)

001: MADSSREENV YLAKLAEQAE RYEEMIEFME KVAKTADVEE LTVEERNLLS VAYKNVIGAR RASWRIISSI EQKEESRGNE DHVNTIKEYR SKIEAELSKI
101: CDGILSLLES NLIPSASTAE SKVFYLKMKG DYHRYLAEFK TGTERKEAAE NTLLAYKSAQ DIALAELAPT HPIRLGLALN FSVFYYEILN SPDRACNLAK
201: QAFDEAISEL DTLGEESYKD STLIMQLLRD NLTLWTSDNA DDVGDDIKEA SKPESGEGQQ

Best Arabidopsis Sequence Match ( AT5G38480.1 )
(BLAST)

001: MSTREENVYM AKLAEQAERY EEMVEFMEKV AKTVDVEELS VEERNLLSVA YKNVIGARRA SWRIISSIEQ KEESKGNEDH VAIIKDYRGK IESELSKICD
101: GILNVLEAHL IPSASPAESK VFYLKMKGDY HRYLAEFKAG AERKEAAEST LVAYKSASDI ATAELAPTHP IRLGLALNFS VFYYEILNSP DRACSLAKQA
201: FDDAIAELDT LGEESYKDST LIMQLLRDNL TLWTSDMTDE AGDEIKEASK PDGAE

Arabidopsis Description

GRF3RCI1 [Source:UniProtKB/TrEMBL;Acc:A0A178UA42]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.