Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g063540.1.1 | cytosol |
| Solyc02g091990.2.1 | cytosol |
| Solyc03g043890.2.1 | cytosol |
| Solyc09g055310.2.1 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH70879 | Soybean | endoplasmic reticulum | 83.21 | 88.03 |
| VIT_01s0011g00620.t01 | Wine grape | cytosol | 85.04 | 87.92 |
| KRH75027 | Soybean | endoplasmic reticulum | 82.48 | 87.26 |
| KRH50527 | Soybean | cytosol | 80.29 | 84.94 |
| KRG89486 | Soybean | cytosol | 79.93 | 84.23 |
| Solyc05g012420.2.1 | Tomato | unclear | 86.5 | 83.16 |
| Bra024713.1-P | Field mustard | cytosol | 79.56 | 81.65 |
| CDY16161 | Canola | cytosol | 79.2 | 80.67 |
| CDX85023 | Canola | cytosol | 79.2 | 80.37 |
| CDY40251 | Canola | cytosol | 71.53 | 80.0 |
| Bra016273.1-P | Field mustard | cytosol | 78.83 | 80.0 |
| AT1G26480.1 | Thale cress | cytosol | 77.37 | 79.1 |
| Solyc04g074230.2.1 | Tomato | extracellular | 72.99 | 75.19 |
| Solyc07g053260.2.1 | Tomato | plastid | 69.71 | 73.18 |
| CDY20560 | Canola | cytosol | 70.8 | 72.66 |
| Solyc12g010860.1.1 | Tomato | plastid | 68.25 | 71.65 |
| Solyc12g057110.2.1 | Tomato | extracellular, nucleus | 64.23 | 69.29 |
| Solyc04g012120.2.1 | Tomato | extracellular, nucleus | 63.14 | 67.84 |
| Solyc03g034180.2.1 | Tomato | cytosol | 63.5 | 67.44 |
| Solyc02g063070.2.1 | Tomato | plastid | 63.5 | 66.92 |
| CDY61631 | Canola | cytosol | 79.2 | 66.16 |
| CDY24128 | Canola | cytosol | 78.83 | 65.85 |
| Bra012455.1-P | Field mustard | cytosol | 71.9 | 64.59 |
| Solyc04g074510.2.1 | Tomato | extracellular, nucleus | 63.14 | 64.55 |
| Solyc11g010200.1.1 | Tomato | nucleus | 63.14 | 64.31 |
| Solyc11g010470.1.1 | Tomato | extracellular, nucleus | 58.39 | 64.26 |
| Solyc04g076060.2.1 | Tomato | nucleus | 58.03 | 63.1 |
Protein Annotations
| Gene3D:1.20.190.20 | InterPro:14-3-3 | InterPro:14-3-3_CS | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain | MapMan:35.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0019904 | InterPro:IPR036815 |
| UniProt:K4ATN1 | PFAM:PF00244 | PIRSF:PIRSF000868 | PRINTS:PR00305 | ScanProsite:PS00796 | ScanProsite:PS00797 |
| PANTHER:PTHR18860 | PANTHER:PTHR18860:SF59 | SMART:SM00101 | SUPFAM:SSF48445 | EnsemblPlantsGene:Solyc01g010360.2 | EnsemblPlants:Solyc01g010360.2.1 |
| UniParc:UPI0002761AF3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:5171935..5175097
Molecular Weight (calculated)
31219.6 Da
IEP (calculated)
4.683
GRAVY (calculated)
-0.804
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKEKERETH VYTAKLAEQA ERYDEMVESM KKVAKLDAEL TVEERNLLSV GYKNVIGARR ASWRIMSSIE QKEESKGNEN NVKLIKGYRQ KVEEELSKIC
101: HDILEIIDKH LIPSSGTGEA TVFYYKMKGD YFRYLAEFKT DQEKKEASEL SLKGYEAATA TANSDLPSTH PIRLGLALNY SVFYYEIMNS PERACHLAKQ
201: AFDEAIAELD TLSEESYKDS TLIMQLLRDN LTLWTSDLPE DGAEENSKAD EPKSAEPPKK TEEAPQKTED PPQN
101: HDILEIIDKH LIPSSGTGEA TVFYYKMKGD YFRYLAEFKT DQEKKEASEL SLKGYEAATA TANSDLPSTH PIRLGLALNY SVFYYEIMNS PERACHLAKQ
201: AFDEAIAELD TLSEESYKDS TLIMQLLRDN LTLWTSDLPE DGAEENSKAD EPKSAEPPKK TEEAPQKTED PPQN
001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN
Arabidopsis Description
GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.