CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81296	cytosol
CDY14376	nucleus
CDY18674	cytosol
CDY32974	nucleus
CDY66209	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26480.1	CDY14376	AT5G58550.1	23512855
AT1G26480.1	CDY32974	AT5G58550.1	23512855
AT1G26480.1	CDY66209	AT5G58550.1	23512855
AT1G26480.1	CDX81296	AT5G65800.1	23512855
AT1G26480.1	CDY18674	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024713.1-P	Field mustard	cytosol	98.14	98.88
CDX85023	Canola	cytosol	98.51	98.15
AT1G26480.1	Thale cress	cytosol	93.68	94.03
CDY40251	Canola	cytosol	84.76	93.06
CDY20560	Canola	cytosol	84.01	84.64
KRG89486	Soybean	cytosol	81.78	84.62
KRH50527	Soybean	cytosol	81.41	84.56
KRH75027	Soybean	endoplasmic reticulum	80.67	83.78
KRH70879	Soybean	endoplasmic reticulum	80.67	83.78
VIT_01s0011g00620.t01	Wine grape	cytosol	82.16	83.4
Solyc05g012420.2.1	Tomato	unclear	84.01	79.3
Solyc01g010360.2.1	Tomato	cytosol	80.67	79.2
PGSC0003DMT400072941	Potato	cytosol	83.27	78.6
CDY61631	Canola	cytosol	95.54	78.35
CDY24128	Canola	cytosol	95.17	78.05
CDY69181	Canola	cytosol	72.12	76.68
CDY38227	Canola	cytosol	71.75	76.28
CDY61201	Canola	cytosol	71.0	70.22
CDY42826	Canola	cytosol	70.26	69.74
CDX91996	Canola	cytosol	66.91	68.97
CDX74521	Canola	cytosol	65.8	68.87
CDY01659	Canola	cytosol	65.8	68.87
CDY71290	Canola	cytosol	65.43	68.48
CDX67405	Canola	cytosol	65.43	68.22
CDX74252	Canola	cytosol	66.17	68.2
CDY28698	Canola	cytosol	66.17	68.2
CDY51543	Canola	cytosol	66.17	68.2
CDY48771	Canola	cytosol	46.1	68.13
CDX68022	Canola	cytosol	64.31	66.54
CDX79255	Canola	cytosol	64.31	66.54
CDX88436	Canola	cytosol	64.31	66.54
CDY12024	Canola	cytosol	64.31	66.28
CDY14618	Canola	cytosol	63.94	66.15
CDY28408	Canola	cytosol	64.31	65.78
CDX73313	Canola	cytosol	64.68	65.66
CDY41483	Canola	cytosol	62.08	64.48
CDY08794	Canola	cytosol	59.11	64.11
CDX91676	Canola	cytosol	61.71	64.09
CDY14562	Canola	cytosol	58.74	63.71
CDY46646	Canola	cytosol	60.97	63.08
CDY00447	Canola	cytosol	60.97	63.08
CDX81287	Canola	cytosol	58.36	63.05
CDY54716	Canola	cytosol	58.36	63.05
CDY40098	Canola	cytosol	57.25	62.1
CDX85759	Canola	cytosol	57.25	62.1
CDX78381	Canola	cytosol	57.62	62.0
CDX81179	Canola	cytosol	57.62	62.0
CDX97016	Canola	cytosol	50.19	59.21
CDX87455	Canola	cytosol	64.68	58.19
CDX91673	Canola	cytosol	57.25	57.25
CDX87464	Canola	cytosol	38.29	48.58
CDX88428	Canola	cytosol	42.75	47.72
CDY03135	Canola	cytosol	68.4	46.7
CDY56386	Canola	mitochondrion	33.46	45.69
CDY52206	Canola	mitochondrion	33.46	45.69
CDX97014	Canola	cytosol, plastid	16.73	40.91

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
GO:A0A078FSV3	UniProt:A0A078FSV3	EnsemblPlants:CDY16161	ProteinID:CDY16161	ProteinID:CDY16161.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	EnsemblPlantsGene:GSBRNA2T00090602001	InterPro:IPR036815
PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860
PANTHER:PTHR18860:SF59	SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI0004EE7EEE	SEG:seg	:

Description

BnaA09g28950DBnaA09g28950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSV3]

Coordinates

chrLK032061:-:255523..257063

Molecular Weight (calculated)

30600.8 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.673

Length

269 amino acids

Sequence
(BLAST)

001: MSSGSDKERE TFVYLAKLSE QAERYDEMVE TMKKVAKVDS ELTVEERNLL SVGYKNVIGA RRASWRIMSS IEQKEESKGN ESNVKTIKGY RQKVEDELAN
101: ICQDILSIID QHLIPHATSG EATVFYYKMK GDYYRYLAEF KTEQERKEAS EQSLKGYEAA TQAASTELPS THPIRLGLAL NFSVFYYEIM NSPERACHLA
201: KQAFDEAIAE LDTLSEESYK DSTLIMQLLR DNLTLWTSDL PEDGGEDTKT DEPKKEEAKP AEATEVIDL

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.