Factsheet for PGSC0003DMT400072941

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008587	cytosol
PGSC0003DMT400008605	cytosol
PGSC0003DMT400013977	cytosol
PGSC0003DMT400051035	nucleus
PGSC0003DMT400055203	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26480.1	PGSC0003DMT400051035	AT5G58550.1	23512855
AT1G26480.1	PGSC0003DMT400008587	AT5G65800.1	23512855
AT1G26480.1	PGSC0003DMT400008605	AT5G65800.1	23512855
AT1G26480.1	PGSC0003DMT400013977	AT5G65800.1	23512855
AT1G26480.1	PGSC0003DMT400055203	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012420.2.1	Tomato	unclear	98.6	98.6
VIT_01s0011g00620.t01	Wine grape	cytosol	82.46	88.68
KRH70879	Soybean	endoplasmic reticulum	79.3	87.26
KRH75027	Soybean	endoplasmic reticulum	78.6	86.49
KRH50527	Soybean	cytosol	77.89	85.71
KRG89486	Soybean	cytosol	77.89	85.38
Bra024713.1-P	Field mustard	cytosol	78.95	84.27
CDY16161	Canola	cytosol	78.6	83.27
Bra016273.1-P	Field mustard	cytosol	78.25	82.59
CDX85023	Canola	cytosol	78.25	82.59
CDY40251	Canola	cytosol	70.88	82.45
AT1G26480.1	Thale cress	cytosol	76.84	81.72
PGSC0003DMT400016422	Potato	cytosol	71.93	81.35
PGSC0003DMT400052619	Potato	cytosol	68.42	74.71
CDY20560	Canola	cytosol	69.82	74.53
PGSC0003DMT400020200	Potato	cytosol	67.02	73.75
PGSC0003DMT400045782	Potato	cytosol	63.16	70.87
PGSC0003DMT400079172	Potato	cytosol	63.51	69.88
PGSC0003DMT400060654	Potato	cytosol	62.11	69.41
PGSC0003DMT400041810	Potato	cytosol	62.46	68.99
PGSC0003DMT400050389	Potato	cytosol	62.81	68.85
PGSC0003DMT400062153	Potato	cytosol	62.81	68.85
CDY61631	Canola	cytosol	78.25	67.99
CDY24128	Canola	cytosol	77.89	67.68
Bra012455.1-P	Field mustard	cytosol	70.53	65.9
PGSC0003DMT400041634	Potato	cytosol	57.19	65.46
PGSC0003DMT400033585	Potato	cytosol	56.14	63.49

Protein Annotations

Gene3D:1.20.190.20	EntrezGene:102600581	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain
MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904
InterPro:IPR036815	UniProt:M1CR90	PFAM:PF00244	EnsemblPlantsGene:PGSC0003DMG400028377	PGSC:PGSC0003DMG400028377	EnsemblPlants:PGSC0003DMT400072941
PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF59
SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI00029556A7	RefSeq:XP_006348703.1	SEG:seg	:

Description

14-3-3 protein Lil 1433-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400028377]

Coordinates

chr5:+:432718..436572

Molecular Weight (calculated)

32219.8 Da

IEP (calculated)

4.651

GRAVY (calculated)

-0.704

Length

285 amino acids

Sequence
(BLAST)

001: MASQKERETH VYMAKLAEQA ERYDEMVESM KNVAKLDVEL TVEERNLLSV GYKNVIGARR ASWRIMSSIE QKEESKGNEQ NVKLIKGYRQ KVEEELSKIC
101: SDILEIIDKH LIPSAGTGEA TVFYYKMKGD YFRYLAEFKT DLERKEASEQ SLKGYEAATA TANTDLSSTH PIRLGLALNF SVFYYEIKNS PERACHLAKQ
201: AFDEAIAELD TLSEESYKDS TLIMQLLRDN LTLWTSDLPE DGGEENVKTD EPKAVEPKSA DAKSAEAKST EAKSVEPEEA SKDKQ

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.