Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26480.1 | CDY14376 | AT5G58550.1 | 23512855 |
| AT1G26480.1 | CDY32974 | AT5G58550.1 | 23512855 |
| AT1G26480.1 | CDY66209 | AT5G58550.1 | 23512855 |
| AT1G26480.1 | CDX81296 | AT5G65800.1 | 23512855 |
| AT1G26480.1 | CDY18674 | AT5G65800.1 | 23512855 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20560 | Canola | cytosol | 98.37 | 90.26 |
| CDY16161 | Canola | cytosol | 93.06 | 84.76 |
| CDX85023 | Canola | cytosol | 92.65 | 84.07 |
| AT1G26480.1 | Thale cress | cytosol | 90.61 | 82.84 |
| Bra012455.1-P | Field mustard | cytosol | 99.59 | 80.0 |
| VIT_01s0011g00620.t01 | Wine grape | cytosol | 81.22 | 75.09 |
| KRH70879 | Soybean | endoplasmic reticulum | 79.18 | 74.9 |
| KRH75027 | Soybean | endoplasmic reticulum | 78.78 | 74.52 |
| KRH50527 | Soybean | cytosol | 78.78 | 74.52 |
| KRG89486 | Soybean | cytosol | 78.37 | 73.85 |
| Solyc05g012420.2.1 | Tomato | unclear | 83.27 | 71.58 |
| Solyc01g010360.2.1 | Tomato | cytosol | 80.0 | 71.53 |
| PGSC0003DMT400072941 | Potato | cytosol | 82.45 | 70.88 |
| CDY61631 | Canola | cytosol | 94.29 | 70.43 |
| CDY24128 | Canola | cytosol | 93.47 | 69.82 |
| CDY48771 | Canola | cytosol | 50.61 | 68.13 |
| CDY69181 | Canola | cytosol | 70.2 | 67.98 |
| CDY38227 | Canola | cytosol | 69.8 | 67.59 |
| CDY61201 | Canola | cytosol | 68.16 | 61.4 |
| CDY42826 | Canola | cytosol | 67.76 | 61.25 |
| CDX91996 | Canola | cytosol | 64.9 | 60.92 |
| CDY01659 | Canola | cytosol | 63.67 | 60.7 |
| CDX74521 | Canola | cytosol | 63.67 | 60.7 |
| CDY71290 | Canola | cytosol | 63.27 | 60.31 |
| CDY51543 | Canola | cytosol | 64.08 | 60.15 |
| CDX74252 | Canola | cytosol | 64.08 | 60.15 |
| CDY28698 | Canola | cytosol | 64.08 | 60.15 |
| CDX67405 | Canola | cytosol | 63.27 | 60.08 |
| CDX68022 | Canola | cytosol | 62.04 | 58.46 |
| CDX79255 | Canola | cytosol | 62.04 | 58.46 |
| CDX88436 | Canola | cytosol | 62.04 | 58.46 |
| CDY14618 | Canola | cytosol | 61.63 | 58.08 |
| CDY12024 | Canola | cytosol | 61.63 | 57.85 |
| CDY28408 | Canola | cytosol | 62.04 | 57.79 |
| CDY08794 | Canola | cytosol | 58.37 | 57.66 |
| CDY14562 | Canola | cytosol | 57.96 | 57.26 |
| CDX73313 | Canola | cytosol | 61.63 | 56.98 |
| CDY41483 | Canola | cytosol | 60.0 | 56.76 |
| CDY54716 | Canola | cytosol | 57.55 | 56.63 |
| CDX81287 | Canola | cytosol | 57.55 | 56.63 |
| CDX91676 | Canola | cytosol | 59.59 | 56.37 |
| CDY00447 | Canola | cytosol | 59.18 | 55.77 |
| CDY46646 | Canola | cytosol | 59.18 | 55.77 |
| CDX85759 | Canola | cytosol | 56.33 | 55.65 |
| CDY40098 | Canola | cytosol | 56.33 | 55.65 |
| CDX81179 | Canola | cytosol | 56.73 | 55.6 |
| CDX78381 | Canola | cytosol | 56.73 | 55.6 |
| CDX91673 | Canola | cytosol | 57.96 | 52.79 |
| CDX97016 | Canola | cytosol | 48.98 | 52.63 |
| CDX87455 | Canola | cytosol | 62.45 | 51.17 |
| CDX87464 | Canola | cytosol | 36.73 | 42.45 |
| CDX88428 | Canola | cytosol | 41.63 | 42.32 |
| CDX97014 | Canola | cytosol, plastid | 18.37 | 40.91 |
| CDY03135 | Canola | cytosol | 64.9 | 40.36 |
| CDY52206 | Canola | mitochondrion | 31.84 | 39.59 |
| CDY56386 | Canola | mitochondrion | 31.84 | 39.59 |
Protein Annotations
| Gene3D:1.20.190.20 | InterPro:14-3-3 | InterPro:14-3-3_CS | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain | MapMan:35.1 |
| GO:A0A078HRC1 | UniProt:A0A078HRC1 | EnsemblPlants:CDY40251 | ProteinID:CDY40251 | ProteinID:CDY40251.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0019904 | EnsemblPlantsGene:GSBRNA2T00069405001 | InterPro:IPR036815 |
| PFAM:PF00244 | PIRSF:PIRSF000868 | PRINTS:PR00305 | ScanProsite:PS00797 | PANTHER:PTHR18860 | PANTHER:PTHR18860:SF59 |
| SMART:SM00101 | SUPFAM:SSF48445 | UniParc:UPI0004EDBC24 | : | : | : |
Description
BnaA07g09490DBnaA07g09490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRC1]
Coordinates
chrLK032467:-:18710..20175
Molecular Weight (calculated)
27977.5 Da
IEP (calculated)
4.446
GRAVY (calculated)
-0.749
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGSDKERE TFVYTAKLSE QAERYDEMVE TMKKVAKVDS ELTVEERNLL SKEESKGNET NVKHIKGYRQ KVEDELADIC KDILSIIDQH LIPHATSGEA
101: TVFYYKMKGD YYRYLAEFKT EQERKEASEQ SLKGYEAATQ AASTDLPSTH PIRLGLALNF SVFYYEIMNS PERACHLAKQ AFDEAIAELD TLSEESYKDS
201: TLIMQLLRDN LTLWTSDLPE DGGEDNVKSD EPNQEHCKII EATDK
101: TVFYYKMKGD YYRYLAEFKT EQERKEASEQ SLKGYEAATQ AASTDLPSTH PIRLGLALNF SVFYYEIMNS PERACHLAKQ AFDEAIAELD TLSEESYKDS
201: TLIMQLLRDN LTLWTSDLPE DGGEDNVKSD EPNQEHCKII EATDK
001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN
Arabidopsis Description
GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.