CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81296	cytosol
CDY14376	nucleus
CDY18674	cytosol
CDY32974	nucleus
CDY66209	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26480.1	CDY14376	AT5G58550.1	23512855
AT1G26480.1	CDY32974	AT5G58550.1	23512855
AT1G26480.1	CDY66209	AT5G58550.1	23512855
AT1G26480.1	CDX81296	AT5G65800.1	23512855
AT1G26480.1	CDY18674	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016273.1-P	Field mustard	cytosol	81.71	99.26
CDY61631	Canola	cytosol	98.17	98.17
CDY16161	Canola	cytosol	78.05	95.17
CDX85023	Canola	cytosol	78.05	94.81
AT1G26480.1	Thale cress	cytosol	76.83	94.03
CDY40251	Canola	cytosol	69.82	93.47
CDY20560	Canola	cytosol	71.95	88.39
KRH70879	Soybean	endoplasmic reticulum	66.77	84.56
KRH75027	Soybean	endoplasmic reticulum	66.16	83.78
KRH50527	Soybean	cytosol	66.16	83.78
KRG89486	Soybean	cytosol	66.16	83.46
VIT_01s0011g00620.t01	Wine grape	cytosol	67.38	83.4
Solyc01g010360.2.1	Tomato	cytosol	65.85	78.83
Solyc05g012420.2.1	Tomato	unclear	68.29	78.6
PGSC0003DMT400072941	Potato	cytosol	67.68	77.89
CDY69181	Canola	cytosol	57.93	75.1
CDY38227	Canola	cytosol	57.62	74.7
CDX91996	Canola	cytosol	55.18	69.35
CDY61201	Canola	cytosol	57.32	69.12
CDY42826	Canola	cytosol	56.71	68.63
CDY51543	Canola	cytosol	54.57	68.58
CDY28698	Canola	cytosol	54.57	68.58
CDX74252	Canola	cytosol	54.57	68.58
CDX74521	Canola	cytosol	53.66	68.48
CDY01659	Canola	cytosol	53.66	68.48
CDY71290	Canola	cytosol	53.05	67.7
CDX67405	Canola	cytosol	53.05	67.44
CDY48771	Canola	cytosol	36.89	66.48
CDY28408	Canola	cytosol	53.05	66.16
CDX68022	Canola	cytosol	52.44	66.15
CDX88436	Canola	cytosol	52.44	66.15
CDX79255	Canola	cytosol	52.44	66.15
CDY12024	Canola	cytosol	52.13	65.52
CDY14618	Canola	cytosol	51.83	65.38
CDX73313	Canola	cytosol	52.74	65.28
CDY08794	Canola	cytosol	49.09	64.92
CDY14562	Canola	cytosol	48.78	64.52
CDY41483	Canola	cytosol	50.61	64.09
CDX81287	Canola	cytosol	48.48	63.86
CDY54716	Canola	cytosol	48.48	63.86
CDX91676	Canola	cytosol	50.3	63.71
CDY40098	Canola	cytosol	47.56	62.9
CDX85759	Canola	cytosol	47.56	62.9
CDX78381	Canola	cytosol	47.87	62.8
CDX81179	Canola	cytosol	47.87	62.8
CDY46646	Canola	cytosol	49.7	62.69
CDY00447	Canola	cytosol	49.7	62.69
CDX97016	Canola	cytosol	41.77	60.09
CDX87455	Canola	cytosol	52.44	57.53
CDX91673	Canola	cytosol	46.65	56.88
CDX87464	Canola	cytosol	31.1	48.11
CDX88428	Canola	cytosol	35.06	47.72
CDY03135	Canola	cytosol	55.79	46.45
CDY52206	Canola	mitochondrion	26.83	44.67
CDY56386	Canola	mitochondrion	26.83	44.67
CDX97014	Canola	cytosol, plastid	13.72	40.91

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
GO:A0A078GHM8	UniProt:A0A078GHM8	EnsemblPlants:CDY24128	ProteinID:CDY24128	ProteinID:CDY24128.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0019904	EnsemblPlantsGene:GSBRNA2T00024684001	InterPro:IPR036815	PFAM:PF00244	PRINTS:PR00305	ScanProsite:PS00796
ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF59	SMART:SM00101	SUPFAM:SSF48445	TMHMM:TMhelix
UniParc:UPI0004EB9050	SEG:seg	:	:	:	:

Description

BnaC03g57490DBnaC03g57490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHM8]

Coordinates

chrLK032154:-:1491..3090

Molecular Weight (calculated)

37693.2 Da

IEP (calculated)

4.615

GRAVY (calculated)

-0.586

Length

328 amino acids

Sequence
(BLAST)

001: MSSGSDKDRE TFVYLAKLSE QAERYDEMVE TMKKVAKVDS ELTVEERNLL SVGYKNVIGA RRASWRIMSS IEQKEESKGN ESNVKQIKGY RQKVEDELAD
101: ICKDILTIID QHLIPHATSG EATVFYYKMK GDYYRYFAEF KTEQERKEAS EQSLKGYEAA TQAASTDLPS THPIRLGLAL NFSVFYYEIM NSPERACHLA
201: KQAFDEAIAE LDTLSEESYK DSTLIMQLLR DNLTLWTSDL PEDGGEDNIK TDEAKQEPAK PAEATEVTNL TDQRLWKLNE FRFDAQKGED NSFEFHSLVL
301: SRRCDQKQLN SILYSFSFIT FLLFILLS

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.