Factsheet for Bra012455.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002638.1-P	nucleus
Bra022691.1-P	nucleus
Bra024420.1-P	cytosol
Bra031846.1-P	cytosol
Bra037829.1-P	cytosol

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26480.1	Bra002638.1-P	AT5G58550.1	23512855
AT1G26480.1	Bra022691.1-P	AT5G58550.1	23512855
AT1G26480.1	Bra024420.1-P	AT5G65800.1	23512855
AT1G26480.1	Bra031846.1-P	AT5G65800.1	23512855
AT1G26480.1	Bra037829.1-P	AT5G65800.1	23512855

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40251	Canola	cytosol	80.0	99.59
CDY20560	Canola	cytosol	86.89	99.25
Bra016273.1-P	Field mustard	cytosol	76.72	86.67
Bra024713.1-P	Field mustard	cytosol	75.08	85.77
AT1G26480.1	Thale cress	cytosol	72.79	82.84
VIT_01s0011g00620.t01	Wine grape	cytosol	65.25	75.09
KRH70879	Soybean	endoplasmic reticulum	63.61	74.9
KRH75027	Soybean	endoplasmic reticulum	63.28	74.52
KRH50527	Soybean	cytosol	63.28	74.52
KRG89486	Soybean	cytosol	62.95	73.85
Solyc01g010360.2.1	Tomato	cytosol	64.59	71.9
Solyc05g012420.2.1	Tomato	unclear	66.56	71.23
PGSC0003DMT400072941	Potato	cytosol	65.9	70.53
Bra031383.1-P	Field mustard	cytosol	56.39	67.98
Bra000268.1-P	Field mustard	cytosol	54.43	63.36
Bra028187.1-P	Field mustard	cytosol	51.15	60.7
Bra001049.1-P	Field mustard	cytosol	51.8	60.54
Bra040592.1-P	Field mustard	cytosol	51.48	60.15
Bra028409.1-P	Field mustard	cytosol	50.49	59.69
Bra035027.1-P	Field mustard	cytosol	49.84	58.46
Bra008355.1-P	Field mustard	cytosol	47.87	58.4
Bra003649.1-P	Field mustard	cytosol	49.51	58.08
Bra028068.1-P	Field mustard	cytosol	49.18	57.47
Bra034430.1-P	Field mustard	cytosol	49.51	57.41
Bra024384.1-P	Field mustard	cytosol	46.56	57.26
Bra037818.1-P	Field mustard	cytosol	46.56	57.03
Bra016380.1-P	Field mustard	cytosol	47.87	56.37
Bra006061.1-P	Field mustard	cytosol	45.57	55.38
Bra012325.1-P	Field mustard	cytosol	46.89	54.37
Bra028586.1-P	Field mustard	cytosol	45.57	50.55
Bra035020.1-P	Field mustard	cytosol	34.75	43.27

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
EnsemblPlantsGene:Bra012455	EnsemblPlants:Bra012455.1	EnsemblPlants:Bra012455.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815	UniProt:M4D7J5	PFAM:PF00244	PRINTS:PR00305
ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF59	SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI0002540B11

Description

AT1G26480 (E=9e-099) GRF12, GF14 IOTA | GRF12 (GENERAL REGULATORY FACTOR 12); protein binding / protein phosphorylated amino acid binding

Coordinates

chrA07:-:7508034..7509384

Molecular Weight (calculated)

35288.4 Da

IEP (calculated)

4.543

GRAVY (calculated)

-0.548

Length

305 amino acids

Sequence
(BLAST)

001: MSSGSDKERE TFVYTAKLSE QAERYDEMVE TMKKVAKVDS ELTVEERNLL SKEESKGNET NVKHIKGYRQ KVEDELADIC KDILSIIDQH LIPHATSGEA
101: TVFYYKMKGD YYRYLAEFKT EQERKEASEQ SLKGYEAATQ AASTDLPSTH PIRLGLALNF SVFYYEIMNS PERACHLAKQ AFDEAIAELD TLSEESYKDS
201: TLIMQLLRDN LTLWTSDLPE DGGEDNVKSD EPNQEHCKII EATDVINLIN ISLSCAKLMW FAFLFLCFRN DQRLWKLNEF RLNSTSWFHQ GDETNEFKFY
301: IVLFS

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.