Factsheet for Bra028187.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003253.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra038553.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38480.1	Bra038553.1-P	AT2G18876.1	21798944
AT5G38480.1	Bra003253.1-P	AT3G56850.1	21798944
AT5G38480.1	Bra007274.1-P	AT3G56850.1	21798944
AT5G38480.1	Bra007276.1-P	AT3G56850.1	21798944
AT5G38480.1	Bra014668.1-P	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74521	Canola	cytosol	99.22	99.22
CDY01659	Canola	cytosol	98.83	98.83
AT5G38480.1	Thale cress	cytosol	93.77	94.51
Bra028409.1-P	Field mustard	cytosol	94.16	93.8
KRH01783	Soybean	nucleus	88.33	88.33
Solyc03g034180.2.1	Tomato	cytosol	87.55	87.21
Bra040592.1-P	Field mustard	cytosol	87.94	86.59
VIT_14s0006g03230.t01	Wine grape	cytosol	87.55	85.88
PGSC0003DMT400062153	Potato	cytosol	86.77	85.77
GSMUA_Achr5P23090_001	Banana	cytosol	43.97	85.61
GSMUA_AchrUn_...	Banana	cytosol	43.58	85.5
Solyc02g063070.2.1	Tomato	plastid	86.38	85.38
Bra001049.1-P	Field mustard	cytosol	86.38	85.06
GSMUA_AchrUn_...	Banana	cytosol	43.58	84.85
TraesCS4B01G045500.2	Wheat	cytosol	84.44	83.14
TraesCS4D01G046400.2	Wheat	golgi	84.44	83.14
HORVU4Hr1G007370.1	Barley	plasma membrane	84.44	83.14
TraesCS4A01G268700.1	Wheat	cytosol	84.44	83.14
KRH46909	Soybean	cytosol	84.05	83.08
Os03t0710800-01	Rice	nucleus, plasma membrane	83.66	82.69
PGSC0003DMT400050389	Potato	cytosol	83.27	82.31
Bra008355.1-P	Field mustard	cytosol	78.99	81.2
Bra003649.1-P	Field mustard	cytosol	80.54	79.62
Bra035027.1-P	Field mustard	cytosol	80.16	79.23
Bra028068.1-P	Field mustard	cytosol	80.16	78.93
Bra034430.1-P	Field mustard	cytosol	79.38	77.57
Os11t0546900-01	Rice	plasma membrane	79.77	77.36
OQU83613	Sorghum	cytosol	79.38	76.69
TraesCS4D01G155900.1	Wheat	plastid	78.99	76.32
Zm00001d053090_P001	Maize	plastid	79.38	76.12
Bra016380.1-P	Field mustard	cytosol	75.88	75.29
TraesCS4A01G151000.2	Wheat	cytosol	78.99	75.19
Bra037818.1-P	Field mustard	cytosol	72.76	75.1
TraesCS4B01G159900.1	Wheat	cytosol	79.38	74.73
Bra024384.1-P	Field mustard	cytosol	71.6	74.19
Zm00001d007446_P003	Maize	cytosol	79.38	73.91
Bra006061.1-P	Field mustard	cytosol	71.98	73.71
Bra012325.1-P	Field mustard	cytosol	74.71	73.0
Zm00001d048554_P001	Maize	cytosol	52.53	68.53
Bra031383.1-P	Field mustard	cytosol	67.32	68.38
Bra028586.1-P	Field mustard	cytosol	73.15	68.36
HORVU4Hr1G043300.1	Barley	cytosol	79.77	68.33
Bra024713.1-P	Field mustard	cytosol	68.87	66.29
Bra016273.1-P	Field mustard	cytosol	68.87	65.56
Zm00001d021885_P001	Maize	mitochondrion	41.25	64.24
Bra000268.1-P	Field mustard	cytosol	65.37	64.12
Zm00001d033357_P001	Maize	cytosol	52.14	64.11
Zm00001d007968_P001	Maize	cytosol	51.36	63.16
Zm00001d017434_P001	Maize	cytosol	51.36	63.16
Bra012455.1-P	Field mustard	cytosol	60.7	51.15
HORVU4Hr1G031770.1	Barley	cytosol, plastid	33.85	50.88
Zm00001d018856_P001	Maize	cytosol, plastid	56.81	48.34
Bra035020.1-P	Field mustard	cytosol	42.8	44.9
Zm00001d039042_P001	Maize	cytosol, nucleus, plasma membrane, plastid	57.59	36.36

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
ProteinID:AAO42674	ProteinID:AAO42674.1	EMBL:AY161287	EnsemblPlantsGene:Bra028187	EnsemblPlants:Bra028187.1	EnsemblPlants:Bra028187.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815
UniProt:M4EHC2	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF40	SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI00025445B7	:

Description

AT5G38480 (E=4e-134) GRF3, RCI1 | GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid binding

Coordinates

chrA04:+:6487735..6488763

Molecular Weight (calculated)

28923.1 Da

IEP (calculated)

4.424

GRAVY (calculated)

-0.450

Length

257 amino acids

Sequence
(BLAST)

001: MSSREENVYM AKLAEQAERY EEMVEFMEKV AKTVDSEELT VEERNLLSVA YKNVIGARRA SWRIISSIEQ KEESKGNEEH VAIIKEYRGK IETELSKICD
101: GILNVLEAHL IPSASPAESK VFYLKMKGDY HRYLAEFKAG DERKETAEST LVAYKSAQDI ATAELAPTHP IRLGLALNFS VFYYEILNSP DRACTLAKQA
201: FDEAIAELDT LGEESYKDST LIMQLLRDNL TLWTSDMTDE AGDEIKEASK PEGGAAE

Best Arabidopsis Sequence Match ( AT5G38480.1 )
(BLAST)

001: MSTREENVYM AKLAEQAERY EEMVEFMEKV AKTVDVEELS VEERNLLSVA YKNVIGARRA SWRIISSIEQ KEESKGNEDH VAIIKDYRGK IESELSKICD
101: GILNVLEAHL IPSASPAESK VFYLKMKGDY HRYLAEFKAG AERKEAAEST LVAYKSASDI ATAELAPTHP IRLGLALNFS VFYYEILNSP DRACSLAKQA
201: FDDAIAELDT LGEESYKDST LIMQLLRDNL TLWTSDMTDE AGDEIKEASK PDGAE

Arabidopsis Description

GRF3RCI1 [Source:UniProtKB/TrEMBL;Acc:A0A178UA42]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.