Factsheet for Bra003253.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001031.1-P
Bra003649.1-P
Bra004004.1-P
Bra004368.1-P
Bra008355.1-P
Bra012325.1-P
Bra016380.1-P
Bra019706.1-P
Bra025400.1-P
Bra026891.1-P
Bra033105.1-P
Bra035027.1-P
Bra036210.1-P
Bra039157.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56850.1	Bra019706.1-P	AT1G13740.1	18484180
AT3G56850.1	Bra026891.1-P	AT1G13740.1	18484180
AT3G56850.1	Bra004004.1-P	AT1G69260.1	18484180
AT3G56850.1	Bra004368.1-P	AT1G69260.1	18484180
AT3G56850.1	Bra003649.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra008355.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra012325.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra016380.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra035027.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra001031.1-P	AT3G02140.1	18484180
AT3G56850.1	Bra039157.1-P	AT3G02140.1	18484180
AT3G56850.1	Bra025400.1-P	AT3G29575.1	18484180
AT3G56850.1	Bra033105.1-P	AT3G29575.1	18484180
AT3G56850.1	Bra036210.1-P	AT3G29575.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67659	Canola	nucleus	57.32	89.19
Bra007274.1-P	Field mustard	nucleus	55.83	79.79
Bra007276.1-P	Field mustard	nucleus	55.83	79.79
Bra014668.1-P	Field mustard	nucleus	44.17	77.73
AT3G56850.1	Thale cress	nucleus	56.33	76.43
Bra016953.1-P	Field mustard	nucleus	40.45	61.05
Bra004597.1-P	Field mustard	nucleus	41.94	60.14
KRG94991	Soybean	nucleus	39.45	49.69
KRG94206	Soybean	nucleus	39.45	49.53
KRH64894	Soybean	nucleus	38.46	49.05
KRH57716	Soybean	nucleus	37.22	46.01
PGSC0003DMT400072260	Potato	nucleus	39.45	45.82
Solyc10g081350.1.1	Tomato	nucleus	39.21	45.14
PGSC0003DMT400018574	Potato	nucleus	35.24	44.51
Solyc10g076920.1.1	Tomato	nucleus	25.56	36.4
Bra018800.1-P	Field mustard	nucleus	27.3	29.89
Bra040260.1-P	Field mustard	nucleus	26.3	29.12
Bra022409.1-P	Field mustard	nucleus	25.31	28.81
Bra019436.1-P	Field mustard	nucleus	23.08	27.68
Bra001742.1-P	Field mustard	nucleus	24.32	27.61
Bra017251.1-P	Field mustard	nucleus	27.05	27.53
Bra037533.1-P	Field mustard	nucleus	25.06	26.03
Bra033719.1-P	Field mustard	nucleus, plastid	16.38	24.81
Bra005287.1-P	Field mustard	nucleus	26.8	24.66
Bra015281.1-P	Field mustard	nucleus, plastid	16.13	24.25
Bra011485.1-P	Field mustard	nucleus	24.07	22.1
Bra033649.1-P	Field mustard	nucleus	22.58	21.98
Bra017621.1-P	Field mustard	cytosol	13.65	18.46

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:17.7.2.1.32	EnsemblPlantsGene:Bra003253	EnsemblPlants:Bra003253.1	EnsemblPlants:Bra003253.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M4CGC0	PFAM:PD031914	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002541537	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

AT2G41070 (E=1e-076) EEL, ATBZIP12, DPBF4 | EEL (ENHANCED EM LEVEL); DNA binding / transcription factor

Coordinates

chrA07:-:12203952..12207182

Molecular Weight (calculated)

44955.4 Da

IEP (calculated)

10.827

GRAVY (calculated)

-0.679

Length

403 amino acids

Sequence
(BLAST)

001: MALLCFNSLA PLPSLSSSSS PRLQLSSLAS SVFILKPNII ESKNRVSLSG YNLSNSHGRA AIVKAVASGV DGAEPEEPPK TVVSVDKLPL ESKEAKEKQL
101: LEQRMKMKLA KKIRLHRKRL VRKRKLRKKG RWPPSKMKKL KNRVIVEDPK SQFLNRQQGS SLYTLTLDEV QTHLGSSGKS LGSMNLDELL NEGLSRQGSL
201: ALPRDLSKKT VDEVWKDIQQ DNKNGGSAHE RRDKQGALGE MTLEDLLLKA GVVAETIPGS NHDDPGGAAG LAPWVQYHQL PSMTQPRSFF PYLVADMQVM
301: VSQASLMGGL SDTQTPGRKR VASGEVVEKI VERKQKRMIK NRESAARSRA RKQAYTHELE IKVSRLEEEN ERLRRQKEVE KILPSSPPPD PKRQLRRTSS
401: APF

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.