Factsheet for Bra039157.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001031.1-P
Bra003253.1-P
Bra004004.1-P
Bra004368.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra019436.1-P
Bra019706.1-P
Bra026891.1-P
Bra039157.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	Bra019706.1-P	AT1G13740.1	18484180
AT3G02140.1	Bra026891.1-P	AT1G13740.1	18484180
AT3G02140.1	Bra004004.1-P	AT1G69260.1	18484180
AT3G02140.1	Bra004368.1-P	AT1G69260.1	18484180
AT3G02140.1	Bra001031.1-P	AT3G02140.1	18484180
AT3G02140.1	Bra039157.1-P	AT3G02140.1	18484180
AT3G02140.1	Bra019436.1-P	AT3G44460.1	18484180
AT3G02140.1	Bra003253.1-P	AT3G56850.1	18484180
AT3G02140.1	Bra007274.1-P	AT3G56850.1	18484180
AT3G02140.1	Bra007276.1-P	AT3G56850.1	18484180
AT3G02140.1	Bra014668.1-P	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	96.75	97.1
CDY43256	Canola	mitochondrion	89.53	88.57
Bra001031.1-P	Field mustard	mitochondrion	57.04	57.88
Solyc02g066850.1.1	Tomato	cytosol	13.72	57.58
AT3G02140.1	Thale cress	cytosol	60.65	52.66
Bra027018.1-P	Field mustard	cytosol	11.19	52.54
PGSC0003DMT400036544	Potato	cytosol	17.33	37.8
GSMUA_Achr4P32830_001	Banana	nucleus	18.41	37.5
Bra036210.1-P	Field mustard	nucleus	33.57	36.47
Bra025400.1-P	Field mustard	nucleus	35.02	36.33
Solyc02g032680.1.1	Tomato	cytosol	15.16	35.0
Solyc02g066860.1.1	Tomato	cytosol	16.25	34.62
Bra033105.1-P	Field mustard	nucleus	25.99	33.03
HORVU4Hr1G035770.1	Barley	plastid	13.0	32.43
Solyc02g032710.1.1	Tomato	cytosol	14.8	30.37
Solyc02g030610.1.1	Tomato	cytosol	16.97	29.38
PGSC0003DMT400089614	Potato	cytosol	14.08	28.68
PGSC0003DMT400003712	Potato	nucleus	32.49	28.66
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	13.0	28.35
Solyc02g030650.1.1	Tomato	nucleus	18.41	28.33
Solyc02g066870.1.1	Tomato	cytosol	15.88	28.03
Solyc02g032690.1.1	Tomato	cytosol	24.19	27.92
Solyc02g088910.2.1	Tomato	nucleus	31.41	27.44
Bra026891.1-P	Field mustard	nucleus	30.32	27.18
TraesCS3D01G532000.1	Wheat	nucleus	15.88	25.88
VIT_14s0068g00300.t01	Wine grape	nucleus	36.1	25.84
GSMUA_Achr5P01470_001	Banana	nucleus	26.71	25.78
GSMUA_Achr9P09330_001	Banana	nucleus	31.41	25.74
Bra019706.1-P	Field mustard	nucleus	28.52	25.0
Bra004368.1-P	Field mustard	nucleus	29.24	24.85
TraesCS4B01G246800.1	Wheat	nucleus	21.66	24.79
Bra004004.1-P	Field mustard	nucleus	30.69	24.57
Solyc02g030630.1.1	Tomato	cytosol	27.08	24.51
TraesCS4A01G058100.1	Wheat	nucleus	21.66	24.39
Solyc01g058740.2.1	Tomato	cytosol	6.14	23.94
TraesCS3B01G594200.1	Wheat	cytosol	19.49	23.89
KRH01286	Soybean	nucleus	32.49	23.87
Solyc02g030620.1.1	Tomato	cytosol	25.27	23.65
KRH45047	Soybean	nucleus	32.49	23.5
Solyc02g032670.1.1	Tomato	cytosol	21.66	22.9
GSMUA_Achr6P34980_001	Banana	cytosol	23.1	22.61
TraesCS4D01G246100.2	Wheat	nucleus	20.22	22.31
Bra001242.1-P	Field mustard	nucleus	23.1	22.22
Os03t0214200-01	Rice	nucleus	30.69	21.2
Bra040367.1-P	Field mustard	nucleus	21.3	21.15
EER92642	Sorghum	nucleus	29.6	20.81
Zm00001d048085_P002	Maize	nucleus	29.24	20.61
TraesCS4D01G246400.1	Wheat	nucleus	28.52	19.95
TraesCS4B01G247000.1	Wheat	nucleus	28.16	19.7
Solyc02g066900.1.1	Tomato	cytosol	22.38	19.56
Solyc02g066840.1.1	Tomato	cytosol	10.47	19.33
EER89528	Sorghum	nucleus	23.83	18.49
Solyc02g066890.1.1	Tomato	cytosol	23.1	17.83
HORVU4Hr1G067930.1	Barley	nucleus	25.99	17.82
Solyc02g032720.1.1	Tomato	cytosol	20.94	15.68
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.88	15.66
PGSC0003DMT400036545	Potato	nucleus	24.55	13.91
Solyc02g030600.1.1	Tomato	cytosol	10.11	13.4

Protein Annotations

EnsemblPlants:Bra039157.1	EnsemblPlants:Bra039157.1-P	EnsemblPlantsGene:Bra039157	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:Ninja_fam	InterPro:Ninja_motif	PANTHER:PTHR31413	PFAM:PF07897
PFAM:PF16135	SEG:seg	UniParc:UPI0002547654	UniProt:M4FDI6	MapMan:15.5.53.3	:

Description

AT3G02140 (E=2e-054) TMAC2, AFP4 | TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)

Coordinates

chrA05:+:23718597..23719430

Molecular Weight (calculated)

30786.5 Da

IEP (calculated)

6.920

GRAVY (calculated)

-0.667

Length

277 amino acids

Sequence
(BLAST)

001: MEMLRARGGT NAVVQVPNLS TNNLLQKFFI ASNLFGHRDS EDREEAKKKD EEDDKDIELT LGLSLNGQFG TDPRSRKRKN SELGRSSSIP EGFIFDGQRS
101: GDVYGGDMRQ TVWQGVSDMF FQLDRTRSLP VETEAETKRK RSDKTMELMA CNAPPPTKEK EEKDCFIVPG PVNGRGKKGN TTNKENQNVS GMEKARYILE
201: DMPCVSTRDV GADGKRVEGF LYWYGGNTEE VKIVCVCHGS FLSPAEFVRH GGGTVSAADI MINPLRHIVV KLPSSSL

Best Arabidopsis Sequence Match ( AT3G02140.1 )
(BLAST)

001: MEMIRGRGIP NGVVQVPNLS ANNLLQKFFI ASNHFCQRDS EHGENQQEAK KREDEAEEDE KDVELTLGLS LNGQFGTDPR SRKRRHFELG RSSSIPEGFV
101: FDEQRSGGGN GGDMRRIVGR GGSDMFQLDR TRSLPVVTEM DIEKERKVSE KTRAFMESPV TNRGAYLTKD KNRGQAVETE KPRAFLEFKI PPTKEGKKEK
201: DRLVVTGPVN GKGKNGNTAK KQKNNVENSG MEKARNILED MPCVSTRDVG ADGKRVEGFL YWYGGNKEEV KIVCVCHGSF LSPAEFVRHG GGTVSDDDGG
301: DVMINPLRHI VVKLPSSSI

Arabidopsis Description

AFP4TMAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.