Factsheet for Bra001031.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001031.1-P
Bra003253.1-P
Bra004004.1-P
Bra004368.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra019436.1-P
Bra019706.1-P
Bra026891.1-P
Bra039157.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	Bra019706.1-P	AT1G13740.1	18484180
AT3G02140.1	Bra026891.1-P	AT1G13740.1	18484180
AT3G02140.1	Bra004004.1-P	AT1G69260.1	18484180
AT3G02140.1	Bra004368.1-P	AT1G69260.1	18484180
AT3G02140.1	Bra001031.1-P	AT3G02140.1	18484180
AT3G02140.1	Bra039157.1-P	AT3G02140.1	18484180
AT3G02140.1	Bra019436.1-P	AT3G44460.1	18484180
AT3G02140.1	Bra003253.1-P	AT3G56850.1	18484180
AT3G02140.1	Bra007274.1-P	AT3G56850.1	18484180
AT3G02140.1	Bra007276.1-P	AT3G56850.1	18484180
AT3G02140.1	Bra014668.1-P	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74273	Canola	mitochondrion	97.07	97.07
Bra039157.1-P	Field mustard	cytosol	57.88	57.04
Solyc02g066850.1.1	Tomato	cytosol	13.55	56.06
Bra027018.1-P	Field mustard	cytosol	12.09	55.93
AT3G02140.1	Thale cress	cytosol	50.55	43.26
PGSC0003DMT400036544	Potato	cytosol	19.05	40.94
GSMUA_Achr4P32830_001	Banana	nucleus	18.32	36.76
Bra036210.1-P	Field mustard	nucleus	33.7	36.08
Solyc02g032680.1.1	Tomato	cytosol	15.75	35.83
Solyc02g066860.1.1	Tomato	cytosol	16.48	34.62
Bra025400.1-P	Field mustard	nucleus	33.33	34.08
HORVU4Hr1G035770.1	Barley	plastid	13.19	32.43
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	15.02	32.28
Bra033105.1-P	Field mustard	nucleus	25.64	32.11
Solyc02g032710.1.1	Tomato	cytosol	15.02	30.37
PGSC0003DMT400089614	Potato	cytosol	14.65	29.41
Solyc02g088910.2.1	Tomato	nucleus	33.7	29.02
Solyc02g030610.1.1	Tomato	cytosol	16.85	28.75
PGSC0003DMT400003712	Potato	nucleus	32.97	28.66
Solyc02g030650.1.1	Tomato	nucleus	18.68	28.33
Bra026891.1-P	Field mustard	nucleus	31.87	28.16
Solyc02g066870.1.1	Tomato	cytosol	16.12	28.03
Solyc02g032690.1.1	Tomato	cytosol	23.44	26.67
Bra004368.1-P	Field mustard	nucleus	31.5	26.38
GSMUA_Achr9P09330_001	Banana	nucleus	32.23	26.04
TraesCS3D01G532000.1	Wheat	nucleus	16.12	25.88
Bra019706.1-P	Field mustard	nucleus	29.67	25.63
GSMUA_Achr5P01470_001	Banana	nucleus	26.37	25.09
KRH45047	Soybean	nucleus	34.8	24.8
VIT_14s0068g00300.t01	Wine grape	nucleus	34.8	24.55
KRH01286	Soybean	nucleus	33.7	24.4
Bra004004.1-P	Field mustard	nucleus	30.77	24.28
TraesCS3B01G594200.1	Wheat	cytosol	19.78	23.89
Solyc02g030630.1.1	Tomato	cytosol	26.74	23.86
Solyc02g032670.1.1	Tomato	cytosol	22.71	23.66
Os03t0214200-01	Rice	nucleus	34.07	23.19
TraesCS4A01G058100.1	Wheat	nucleus	20.51	22.76
GSMUA_Achr6P34980_001	Banana	cytosol	23.44	22.61
Solyc01g058740.2.1	Tomato	cytosol	5.86	22.54
TraesCS4B01G246800.1	Wheat	nucleus	19.41	21.9
Solyc02g030620.1.1	Tomato	cytosol	23.08	21.28
Zm00001d048085_P002	Maize	nucleus	30.4	21.12
TraesCS4D01G246100.2	Wheat	nucleus	19.05	20.72
Bra001242.1-P	Field mustard	nucleus	21.61	20.49
EER92642	Sorghum	nucleus	28.94	20.05
Solyc02g066900.1.1	Tomato	cytosol	22.71	19.56
Bra040367.1-P	Field mustard	nucleus	19.78	19.35
TraesCS4D01G246400.1	Wheat	nucleus	27.11	18.69
Solyc02g066840.1.1	Tomato	cytosol	10.26	18.67
EER89528	Sorghum	nucleus	24.18	18.49
TraesCS4B01G247000.1	Wheat	nucleus	26.74	18.43
HORVU4Hr1G067930.1	Barley	nucleus	25.64	17.33
Solyc02g066890.1.1	Tomato	cytosol	22.71	17.27
Solyc02g032720.1.1	Tomato	cytosol	20.51	15.14
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	27.84	14.87
PGSC0003DMT400036545	Potato	nucleus	24.18	13.5
Solyc02g030600.1.1	Tomato	cytosol	9.89	12.92

Protein Annotations

EnsemblPlants:Bra001031.1	EnsemblPlants:Bra001031.1-P	EnsemblPlantsGene:Bra001031	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil	PANTHER:PTHR31413
PFAM:PF07897	PFAM:PF16135	SEG:seg	UniParc:UPI000254085D	UniProt:M4CA02	MapMan:15.5.53.3

Description

AT3G02140 (E=6e-098) TMAC2, AFP4 | TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)

Coordinates

chrA03:-:14450583..14451404

Molecular Weight (calculated)

30006.6 Da

IEP (calculated)

9.502

GRAVY (calculated)

-0.658

Length

273 amino acids

Sequence
(BLAST)

001: MEMLRARGSS TNGVVQVPNL LGKFFVTSNH FCHRDSEHGE RREEAMKKDE DIELTLGLSL NGQFGTDPRS RKRKNFELAR SSSIPEGFVF DGQRSGGDMR
101: QTGVSDMFQL DRTRSLPVET EIEAKRKRAE KTKVQAEAKT FLSFNVPPLP TKEKGEKDGF LVPGPVSGRG KNGNTAKKKN QEVSGMEKAR NILEDMPCVS
201: TRDVGADGKR VEGFLYWYGG SKEEVKIVCV CHGSFLSPAE FVRHGGGTVS DGGGDVTSNP LRHIVVKLPS SSL

Best Arabidopsis Sequence Match ( AT3G02140.1 )
(BLAST)

001: MEMIRGRGIP NGVVQVPNLS ANNLLQKFFI ASNHFCQRDS EHGENQQEAK KREDEAEEDE KDVELTLGLS LNGQFGTDPR SRKRRHFELG RSSSIPEGFV
101: FDEQRSGGGN GGDMRRIVGR GGSDMFQLDR TRSLPVVTEM DIEKERKVSE KTRAFMESPV TNRGAYLTKD KNRGQAVETE KPRAFLEFKI PPTKEGKKEK
201: DRLVVTGPVN GKGKNGNTAK KQKNNVENSG MEKARNILED MPCVSTRDVG ADGKRVEGFL YWYGGNKEEV KIVCVCHGSF LSPAEFVRHG GGTVSDDDGG
301: DVMINPLRHI VVKLPSSSI

Arabidopsis Description

AFP4TMAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.