Factsheet for Solyc02g030610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT3G02140.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT3G02140.1	Solyc04g005380.2.1	AT1G69260.1	18484180
AT3G02140.1	Solyc05g012210.2.1	AT1G69260.1	18484180
AT3G02140.1	Solyc01g058740.2.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030600.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030610.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030620.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030630.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030650.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032670.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032680.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032690.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032710.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032720.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066840.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066850.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066860.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066870.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066890.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066900.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g088910.2.1	AT3G02140.1	18484180
AT3G02140.1	Solyc09g009490.2.1	AT3G44460.1	18484180
AT3G02140.1	Solyc10g076920.1.1	AT3G56850.1	18484180
AT3G02140.1	Solyc10g081350.1.1	AT3G56850.1	18484180
AT3G29575.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT3G29575.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT3G29575.1	Solyc04g005380.2.1	AT1G69260.1	18484180
AT3G29575.1	Solyc05g012210.2.1	AT1G69260.1	18484180
AT3G29575.1	Solyc01g058740.2.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030600.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030610.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030620.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030630.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030650.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032670.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032680.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032690.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032710.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032720.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066840.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066850.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066860.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066870.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066890.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066900.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g088910.2.1	AT3G29575.1	18484180
AT3G29575.1	Solyc09g009490.2.1	AT3G44460.1	18484180
AT3G29575.1	Solyc10g076920.1.1	AT3G56850.1	18484180
AT3G29575.1	Solyc10g081350.1.1	AT3G56850.1	18484180
AT3G29575.1	Solyc10g076920.1.1	AT3G56850.1	21798944
AT3G29575.1	Solyc10g081350.1.1	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036544	Potato	cytosol	52.5	66.14
Solyc01g058740.2.1	Tomato	cytosol	28.12	63.38
Solyc02g032680.1.1	Tomato	cytosol	45.62	60.83
Solyc02g066860.1.1	Tomato	cytosol	48.75	60.0
Solyc02g066850.1.1	Tomato	cytosol	21.25	51.52
Solyc06g083290.1.1	Tomato	cytosol, extracellular, plastid	16.88	39.71
Solyc02g032710.1.1	Tomato	cytosol	29.38	34.81
Solyc02g066870.1.1	Tomato	cytosol	30.62	31.21
Solyc02g032140.1.1	Tomato	cytosol	23.75	30.65
GSMUA_Achr4P32830_001	Banana	nucleus	23.75	27.94
HORVU4Hr1G035770.1	Barley	plastid	18.75	27.03
Solyc02g030650.1.1	Tomato	nucleus	30.0	26.67
AT3G29575.1	Thale cress	nucleus	32.5	22.51
CDY04085	Canola	nucleus	31.88	20.48
CDY44386	Canola	nucleus	31.25	19.92
CDY00093	Canola	nucleus	31.25	19.68
CDY19988	Canola	nucleus	31.25	19.61
Bra036210.1-P	Field mustard	nucleus	31.25	19.61
Solyc02g032690.1.1	Tomato	cytosol	29.38	19.58
CDX85274	Canola	nucleus	30.62	18.49
GSMUA_Achr6P34980_001	Banana	cytosol	32.5	18.37
Bra025400.1-P	Field mustard	nucleus	30.62	18.35
CDX86364	Canola	nucleus	30.62	18.35
TraesCS3D01G532000.1	Wheat	nucleus	19.38	18.24
CDX74273	Canola	mitochondrion	29.38	17.22
Solyc02g032670.1.1	Tomato	cytosol	28.12	17.18
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	29.38	17.03
Bra039157.1-P	Field mustard	cytosol	29.38	16.97
GSMUA_Achr9P09330_001	Banana	nucleus	35.62	16.86
Bra001031.1-P	Field mustard	mitochondrion	28.75	16.85
CDX91976	Canola	mitochondrion	29.38	16.49
CDY43256	Canola	mitochondrion	28.12	16.07
TraesCS3B01G594200.1	Wheat	cytosol	22.5	15.93
TraesCS4A01G058100.1	Wheat	nucleus	24.38	15.85
Solyc02g066900.1.1	Tomato	cytosol	31.25	15.77
Solyc02g030630.1.1	Tomato	cytosol	30.0	15.69
Solyc02g030620.1.1	Tomato	cytosol	28.75	15.54
AT3G02140.1	Thale cress	cytosol	30.62	15.36
TraesCS4B01G246800.1	Wheat	nucleus	23.12	15.29
Solyc02g088910.2.1	Tomato	nucleus	30.0	15.14
GSMUA_Achr5P01470_001	Banana	nucleus	26.88	14.98
TraesCS4D01G246100.2	Wheat	nucleus	23.12	14.74
Bra033105.1-P	Field mustard	nucleus	20.0	14.68
VIT_14s0068g00300.t01	Wine grape	nucleus	33.12	13.7
Solyc04g005380.2.1	Tomato	nucleus	31.88	13.28
KRH01286	Soybean	nucleus	30.62	13.0
Solyc02g066890.1.1	Tomato	cytosol	28.12	12.53
KRH45047	Soybean	nucleus	29.38	12.27
EER92642	Sorghum	nucleus	30.0	12.18
EER89528	Sorghum	nucleus	26.88	12.04
Solyc02g032720.1.1	Tomato	cytosol	27.5	11.89
Os03t0214200-01	Rice	nucleus	29.38	11.72
Zm00001d048085_P002	Maize	nucleus	26.88	10.94
Solyc05g012210.2.1	Tomato	extracellular, golgi	31.25	10.8
TraesCS4D01G246400.1	Wheat	nucleus	25.62	10.35
HORVU4Hr1G067930.1	Barley	nucleus	25.62	10.15
TraesCS4B01G247000.1	Wheat	nucleus	25.0	10.1
Solyc02g066840.1.1	Tomato	cytosol	8.12	8.67
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	25.62	8.02
Solyc02g030600.1.1	Tomato	cytosol	6.88	5.26

Protein Annotations

EnsemblPlants:Solyc02g030610.1.1	EnsemblPlantsGene:Solyc02g030610.1	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:Jas	InterPro:Ninja_fam	PANTHER:PTHR31413	PANTHER:PTHR31413:SF10	PFAM:PF16135	UniParc:UPI0002768DD1
UniProt:K4B5A9	MapMan:15.5.53.3	:	:	:	:

Description

No Description!

Coordinates

chr2:+:26502930..26503560

Molecular Weight (calculated)

17912.6 Da

IEP (calculated)

9.485

GRAVY (calculated)

-0.293

Length

160 amino acids

Sequence
(BLAST)

001: MDITGENSRN VKLNLGRSLI GNLGINSKKM KILNRSLSIT NGNYSVLFSL GLQGSVASSF TEYETQQPPN LWKSAKEVGE KLRKFLYKMP SVFYDGPNGK
101: KTKGYLLYSF TKREDLKIVC ACHASFFIPA EFVKHGGGGD VDVEDPLNYI NIILDYLKMD

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.