Factsheet for Solyc02g088910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT3G02140.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT3G02140.1	Solyc04g005380.2.1	AT1G69260.1	18484180
AT3G02140.1	Solyc05g012210.2.1	AT1G69260.1	18484180
AT3G02140.1	Solyc01g058740.2.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030600.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030610.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030620.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030630.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030650.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032670.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032680.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032690.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032710.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032720.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066840.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066850.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066860.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066870.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066890.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066900.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g088910.2.1	AT3G02140.1	18484180
AT3G02140.1	Solyc09g009490.2.1	AT3G44460.1	18484180
AT3G02140.1	Solyc10g076920.1.1	AT3G56850.1	18484180
AT3G02140.1	Solyc10g081350.1.1	AT3G56850.1	18484180
AT3G29575.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT3G29575.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT3G29575.1	Solyc04g005380.2.1	AT1G69260.1	18484180
AT3G29575.1	Solyc05g012210.2.1	AT1G69260.1	18484180
AT3G29575.1	Solyc01g058740.2.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030600.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030610.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030620.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030630.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030650.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032670.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032680.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032690.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032710.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032720.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066840.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066850.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066860.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066870.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066890.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066900.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g088910.2.1	AT3G29575.1	18484180
AT3G29575.1	Solyc09g009490.2.1	AT3G44460.1	18484180
AT3G29575.1	Solyc10g076920.1.1	AT3G56850.1	18484180
AT3G29575.1	Solyc10g081350.1.1	AT3G56850.1	18484180
AT3G29575.1	Solyc10g076920.1.1	AT3G56850.1	21798944
AT3G29575.1	Solyc10g081350.1.1	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003712	Potato	nucleus	80.76	81.53
Solyc02g066850.1.1	Tomato	cytosol	14.2	68.18
AT3G29575.1	Thale cress	nucleus	41.01	56.28
Solyc06g083290.1.1	Tomato	cytosol, extracellular, plastid	11.67	54.41
GSMUA_Achr4P32830_001	Banana	nucleus	22.4	52.21
Bra036210.1-P	Field mustard	nucleus	41.32	51.37
CDY19988	Canola	nucleus	41.32	51.37
Bra025400.1-P	Field mustard	nucleus	43.22	51.31
CDX86364	Canola	nucleus	43.22	51.31
CDY04085	Canola	nucleus	40.06	51.0
CDY44386	Canola	nucleus	40.38	51.0
CDX85274	Canola	nucleus	42.59	50.94
CDY00093	Canola	nucleus	40.69	50.79
Bra033105.1-P	Field mustard	nucleus	31.55	45.87
GSMUA_Achr9P09330_001	Banana	nucleus	42.9	40.24
VIT_14s0068g00300.t01	Wine grape	nucleus	45.74	37.47
Solyc02g032710.1.1	Tomato	cytosol	15.77	37.04
HORVU4Hr1G035770.1	Barley	plastid	12.93	36.94
Solyc02g066870.1.1	Tomato	cytosol	17.98	36.31
KRH01286	Soybean	nucleus	42.9	36.07
KRH45047	Soybean	nucleus	43.53	36.03
Solyc02g032680.1.1	Tomato	cytosol	13.56	35.83
Solyc02g066860.1.1	Tomato	cytosol	14.51	35.38
GSMUA_Achr5P01470_001	Banana	nucleus	31.86	35.19
CDX74273	Canola	mitochondrion	30.28	35.16
Solyc04g005380.2.1	Tomato	nucleus	41.32	34.11
CDX91976	Canola	mitochondrion	30.6	34.04
Bra001031.1-P	Field mustard	mitochondrion	29.02	33.7
Solyc02g032690.1.1	Tomato	cytosol	24.61	32.5
Solyc02g030650.1.1	Tomato	nucleus	18.3	32.22
GSMUA_Achr6P34980_001	Banana	cytosol	28.71	32.16
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	27.76	31.88
Bra039157.1-P	Field mustard	cytosol	27.44	31.41
CDY43256	Canola	mitochondrion	27.13	30.71
Solyc02g032140.1.1	Tomato	cytosol	11.99	30.65
TraesCS3B01G594200.1	Wheat	cytosol	21.45	30.09
Solyc02g030610.1.1	Tomato	cytosol	15.14	30.0
TraesCS3D01G532000.1	Wheat	nucleus	16.09	30.0
Solyc02g032670.1.1	Tomato	cytosol	23.66	28.63
AT3G02140.1	Thale cress	cytosol	28.08	27.9
Os03t0214200-01	Rice	nucleus	35.02	27.68
TraesCS4B01G246800.1	Wheat	nucleus	20.82	27.27
Solyc05g012210.2.1	Tomato	extracellular, golgi	38.8	26.57
Solyc02g030630.1.1	Tomato	cytosol	25.24	26.14
Solyc02g030620.1.1	Tomato	cytosol	23.97	25.68
EER89528	Sorghum	nucleus	28.08	24.93
EER92642	Sorghum	nucleus	30.91	24.87
TraesCS4A01G058100.1	Wheat	nucleus	19.24	24.8
TraesCS4D01G246400.1	Wheat	nucleus	30.28	24.24
Zm00001d048085_P002	Maize	nucleus	29.65	23.92
HORVU4Hr1G067930.1	Barley	nucleus	30.28	23.76
TraesCS4B01G247000.1	Wheat	nucleus	29.65	23.74
TraesCS4D01G246100.2	Wheat	nucleus	18.61	23.51
Solyc01g058740.2.1	Tomato	cytosol	5.05	22.54
Solyc02g066900.1.1	Tomato	cytosol	22.4	22.4
Solyc02g066890.1.1	Tomato	cytosol	24.61	21.73
Solyc02g066840.1.1	Tomato	cytosol	9.46	20.0
Solyc02g032720.1.1	Tomato	cytosol	23.34	20.0
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.91	19.18
Solyc02g030600.1.1	Tomato	cytosol	9.46	14.35

Protein Annotations

EnsemblPlants:Solyc02g088910.2.1	EnsemblPlantsGene:Solyc02g088910.2	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil	PANTHER:PTHR31413
PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg	UniParc:UPI00027688B0
UniProt:K4BC45	MapMan:15.5.53.3	:	:	:	:

Description

No Description!

Coordinates

chr2:-:50833208..50836102

Molecular Weight (calculated)

34815.3 Da

IEP (calculated)

8.394

GRAVY (calculated)

-0.793

Length

317 amino acids

Sequence
(BLAST)

001: MAEAEENREK RCFSSMQMEV FSRDLLHKFM NGNNNKFHEI PNEEDELELS LGLSLNGRFG VDPERAKRLK RSSSISNFVF SGGDESNGRC SFSVGPIART
101: CSLPVEGEEE CRKRKELQSL RRLEAKRKRM EKLRVVKDKV DLDERPEENG GSNNGPVGNS LPLSQGSMAS QGSGSSGISD FGSQPIQGPG DNSTGANTPT
201: SIKPSEQEHE QKQVAKPPKI TSEKPPTTCN GSASKEAKEM FKNYMLNMPC VSTMGKGPNG KKIEGFLYRY QKGEEVKIMC VCHGNFLSPA EFVKHAGGGD
301: VANPLKQIVV NPSPLLR

Best Arabidopsis Sequence Match ( AT3G29575.3 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.