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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02140.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc01g058740.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030600.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030610.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030620.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030630.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030650.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032670.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032680.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032690.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032710.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032720.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066840.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066850.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066860.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066870.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066890.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066900.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g088910.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G02140.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G02140.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc01g058740.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030600.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030610.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030620.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030630.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030650.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032670.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032680.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032690.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032710.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032720.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066840.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066850.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066860.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066870.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066890.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066900.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g088910.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 21798944
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g066850.1.1 Tomato cytosol 15.95 89.39
Solyc06g083290.1.1 Tomato cytosol, extracellular, plastid 9.73 52.94
Solyc02g066890.1.1 Tomato cytosol 42.7 44.01
Solyc02g030650.1.1 Tomato nucleus 18.65 38.33
PGSC0003DMT400036545 Potato nucleus 50.54 38.24
Solyc02g032670.1.1 Tomato cytosol 26.22 37.02
Solyc02g066900.1.1 Tomato cytosol 31.08 36.28
GSMUA_Achr4P32830_001 Banana nucleus 13.24 36.03
Solyc02g032680.1.1 Tomato cytosol 11.35 35.0
Solyc02g066860.1.1 Tomato cytosol 11.62 33.08
Solyc02g032690.1.1 Tomato cytosol 21.08 32.5
HORVU4Hr1G035770.1 Barley plastid 9.46 31.53
Solyc02g030620.1.1 Tomato cytosol 24.32 30.41
Solyc02g032710.1.1 Tomato cytosol 10.81 29.63
Solyc02g030610.1.1 Tomato cytosol 11.89 27.5
Solyc02g066870.1.1 Tomato cytosol 11.62 27.39
AT3G29575.1 Thale cress nucleus 17.03 27.27
Solyc02g030630.1.1 Tomato cytosol 22.16 26.8
Solyc01g058740.2.1 Tomato cytosol 5.14 26.76
CDY19988 Canola nucleus 18.38 26.67
Bra036210.1-P Field mustard nucleus 18.38 26.67
Solyc02g032140.1.1 Tomato cytosol 8.92 26.61
CDY00093 Canola nucleus 18.11 26.38
CDY44386 Canola nucleus 17.57 25.9
CDY04085 Canola nucleus 17.3 25.7
TraesCS3D01G532000.1 Wheat nucleus 11.62 25.29
CDX85274 Canola nucleus 18.11 25.28
Bra025400.1-P Field mustard nucleus 18.11 25.09
CDX86364 Canola nucleus 18.11 25.09
GSMUA_Achr9P09330_001 Banana nucleus 21.35 23.37
Solyc02g088910.2.1 Tomato nucleus 20.0 23.34
GSMUA_Achr5P01470_001 Banana nucleus 17.3 22.3
CDX74273 Canola mitochondrion 15.68 21.25
GSMUA_Achr6P34980_001 Banana cytosol 16.22 21.2
Bra039157.1-P Field mustard cytosol 15.68 20.94
TraesCS3B01G594200.1 Wheat cytosol 12.7 20.8
TraesCS4A01G058100.1 Wheat nucleus 13.78 20.73
Bra001031.1-P Field mustard mitochondrion 15.14 20.51
CDX91976 Canola mitochondrion 15.68 20.35
CDY68672 Canola cytosol, mitochondrion, nucleus, plastid 15.14 20.29
TraesCS4B01G246800.1 Wheat nucleus 13.24 20.25
Bra033105.1-P Field mustard nucleus 11.89 20.18
KRH01286 Soybean nucleus 20.54 20.16
KRH45047 Soybean nucleus 20.81 20.1
TraesCS4D01G246100.2 Wheat nucleus 12.97 19.12
Solyc04g005380.2.1 Tomato nucleus 19.73 19.01
VIT_14s0068g00300.t01 Wine grape nucleus 19.73 18.86
CDY43256 Canola mitochondrion 13.78 18.21
AT3G02140.1 Thale cress cytosol 15.41 17.87
TraesCS4D01G246400.1 Wheat nucleus 18.11 16.92
Os03t0214200-01 Rice nucleus 18.11 16.71
Zm00001d048085_P002 Maize nucleus 17.57 16.54
EER92642 Sorghum nucleus 17.57 16.5
EER89528 Sorghum nucleus 15.68 16.25
TraesCS4B01G247000.1 Wheat nucleus 17.3 16.16
Solyc05g012210.2.1 Tomato extracellular, golgi 20.0 15.98
HORVU4Hr1G067930.1 Barley nucleus 17.3 15.84
Solyc02g030600.1.1 Tomato cytosol 7.84 13.88
TraesCS4A01G057800.1 Wheat cytosol, mitochondrion, nucleus, plastid 17.84 12.92
Solyc02g066840.1.1 Tomato cytosol 4.32 10.67
Protein Annotations
EnsemblPlants:Solyc02g032720.1.1EnsemblPlantsGene:Solyc02g032720.1GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987
InterPro:JasInterPro:Ninja_famPANTHER:PTHR31413PANTHER:PTHR31413:SF10PFAM:PF16135SEG:seg
UniParc:UPI0002767560UniProt:K4B5L6MapMan:15.5.53.3:::
Description
No Description!
Coordinates
chr2:-:29020941..29022167
Molecular Weight (calculated)
42556.5 Da
IEP (calculated)
6.199
GRAVY (calculated)
-0.807
Length
370 amino acids
Sequence
(BLAST)
001: METQMEYWRQ RNLLPPMETE MEWRQHNYPF SVTKTYSLPM ESGVVCRRQQ NYPFSVTRMS SLPRDTEIEW RQRLEAEMAW RRRMDTEIEW RKRLDDEMDW
101: RRRMETEIEC RHRMETEMEW RQINGSFSVM RIASMSSMET QTEWGKMSDP FSVNRTASLP PMETGEEWMH KYDPFLTMRT PSLPPMETGI DWKERRDLQI
201: QTHGDVQQNR WDKLKNVINE GNGTSSLPSP GGSGSVGSVG SAGTSFETQQ HLPNQGASGS SNAIPPINGI LEQMQHLIVE PIEATNEQSP HLSGKEALKN
301: FLLKMPGVST QGDGPNGKKI EGFFYAYKRG GEVKIVCICH GHFLTPAQFV KHAGGGDVEN PLRLINVDPN
Best Arabidopsis Sequence Match ( AT3G29575.3 )
(BLAST)
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.