Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g066850.1.1 | Tomato | cytosol | 11.66 | 86.36 |
| Solyc02g032720.1.1 | Tomato | cytosol | 38.24 | 50.54 |
| PGSC0003DMT400036544 | Potato | cytosol | 10.43 | 40.16 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 10.02 | 36.03 |
| PGSC0003DMT400089614 | Potato | cytosol | 9.82 | 35.29 |
| AT3G29575.1 | Thale cress | nucleus | 15.13 | 32.03 |
| HORVU4Hr1G035770.1 | Barley | plastid | 7.16 | 31.53 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 8.18 | 31.5 |
| CDY00093 | Canola | nucleus | 16.16 | 31.1 |
| Bra036210.1-P | Field mustard | nucleus | 16.16 | 30.98 |
| CDY19988 | Canola | nucleus | 16.16 | 30.98 |
| CDY44386 | Canola | nucleus | 15.54 | 30.28 |
| CDY04085 | Canola | nucleus | 15.34 | 30.12 |
| CDX85274 | Canola | nucleus | 15.95 | 29.43 |
| CDX86364 | Canola | nucleus | 15.95 | 29.21 |
| Bra025400.1-P | Field mustard | nucleus | 15.95 | 29.21 |
| PGSC0003DMT400003712 | Potato | nucleus | 16.36 | 25.48 |
| CDX74273 | Canola | mitochondrion | 13.91 | 24.91 |
| Bra033105.1-P | Field mustard | nucleus | 11.04 | 24.77 |
| KRH01286 | Soybean | nucleus | 19.02 | 24.67 |
| Bra039157.1-P | Field mustard | cytosol | 13.91 | 24.55 |
| Bra001031.1-P | Field mustard | mitochondrion | 13.5 | 24.18 |
| KRH45047 | Soybean | nucleus | 18.81 | 24.02 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.5 | 23.91 |
| CDX91976 | Canola | mitochondrion | 13.91 | 23.86 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 8.18 | 23.53 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 16.16 | 23.37 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 13.29 | 22.65 |
| PGSC0003DMT400045906 | Potato | nucleus | 17.79 | 22.42 |
| PGSC0003DMT400072760 | Potato | nucleus | 18.81 | 22.38 |
| CDY43256 | Canola | mitochondrion | 12.68 | 22.14 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 12.47 | 21.55 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 16.77 | 21.19 |
| AT3G02140.1 | Thale cress | cytosol | 13.7 | 21.0 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 10.63 | 20.72 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 10.22 | 20.66 |
| EER89528 | Sorghum | nucleus | 14.52 | 19.89 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 9.0 | 19.47 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 9.61 | 19.11 |
| Os03t0214200-01 | Rice | nucleus | 15.54 | 18.95 |
| EER92642 | Sorghum | nucleus | 14.72 | 18.27 |
| PGSC0003DMT400051959 | Potato | nucleus | 9.41 | 17.9 |
| Zm00001d048085_P002 | Maize | nucleus | 14.11 | 17.56 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 14.31 | 17.33 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 13.29 | 16.41 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 13.09 | 16.16 |
| PGSC0003DMT400091590 | Potato | cytosol | 11.45 | 13.73 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 14.31 | 13.7 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400036545 | EnsemblPlantsGene:PGSC0003DMG400014084 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:Ninja_fam | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF10 | PFAM:PF16135 | PGSC:PGSC0003DMG400014084 |
| SEG:seg | UniParc:UPI00029584F0 | UniProt:M1B3T5 | MapMan:15.5.53.3 | : | : |
Description
Ninja-family protein AFP3 [Source:PGSC_GENE;Acc:PGSC0003DMG400014084]
Coordinates
chr2:+:25168907..25170514
Molecular Weight (calculated)
55798.5 Da
IEP (calculated)
4.883
GRAVY (calculated)
-0.851
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MERANYQDKG KRIVDDVSVE LTLGLSGFGA SSKKPKILNH SSSMANGEHS GYNNSNRNVN DFQFSVIRPA SLPMETEAEW RKMNDPFSIM KTSSLPMESE
101: MQWRQSNDPF SVTRTSSSPM ETEMEYWRQR NDPFSVTRTS SLPMETEMEY WRQRNNLYSV TRTSSLPMET EIDWRQRNDP YSIMKTYSLP MESEVEWRQR
201: METEMDWRQR METEIEWRRR METEMEYWRQ MNDPFSIMKT ASLPPMETEI EWMQRSDPFS VNRTASLPPM ETEEEWMQKN DPFSTMRTAS LPPMETEMDW
301: KERRDLQTQM RRDAKQKSWA KLKNVIIVEE NEVNETSSLP SSGGSGSQGS VGSSETGFET PQQLPTQVNG TSIAGASGSS NAIPPASGTL EQMQHLIVAA
401: IEATNEQSPD FSGKEGLRNF LLKMPGVSTK GDGSNGKKTE GFLYAYKKGG EVKIVCICHG HFLTPAEFVK HAGGGDVENP LKLITIDPN
101: MQWRQSNDPF SVTRTSSSPM ETEMEYWRQR NDPFSVTRTS SLPMETEMEY WRQRNNLYSV TRTSSLPMET EIDWRQRNDP YSIMKTYSLP MESEVEWRQR
201: METEMDWRQR METEIEWRRR METEMEYWRQ MNDPFSIMKT ASLPPMETEI EWMQRSDPFS VNRTASLPPM ETEEEWMQKN DPFSTMRTAS LPPMETEMDW
301: KERRDLQTQM RRDAKQKSWA KLKNVIIVEE NEVNETSSLP SSGGSGSQGS VGSSETGFET PQQLPTQVNG TSIAGASGSS NAIPPASGTL EQMQHLIVAA
401: IEATNEQSPD FSGKEGLRNF LLKMPGVSTK GDGSNGKKTE GFLYAYKKGG EVKIVCICHG HFLTPAEFVK HAGGGDVENP LKLITIDPN
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.