Factsheet for PGSC0003DMT400006851

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003712
PGSC0003DMT400018574
PGSC0003DMT400036544
PGSC0003DMT400036545
PGSC0003DMT400045906
PGSC0003DMT400072260
PGSC0003DMT400072760
PGSC0003DMT400089614
PGSC0003DMT400095238

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44460.1	PGSC0003DMT400045906	AT1G13740.1	18484180
AT3G44460.1	PGSC0003DMT400072760	AT1G13740.1	18484180
AT3G44460.1	PGSC0003DMT400045906	AT1G69260.1	18484180
AT3G44460.1	PGSC0003DMT400072760	AT1G69260.1	18484180
AT3G44460.1	PGSC0003DMT400003712	AT3G02140.1	18484180
AT3G44460.1	PGSC0003DMT400036544	AT3G02140.1	18484180
AT3G44460.1	PGSC0003DMT400036545	AT3G02140.1	18484180
AT3G44460.1	PGSC0003DMT400089614	AT3G02140.1	18484180
AT3G44460.1	PGSC0003DMT400095238	AT3G02140.1	18484180
AT3G44460.1	PGSC0003DMT400003712	AT3G29575.1	18484180
AT3G44460.1	PGSC0003DMT400036544	AT3G29575.1	18484180
AT3G44460.1	PGSC0003DMT400036545	AT3G29575.1	18484180
AT3G44460.1	PGSC0003DMT400089614	AT3G29575.1	18484180
AT3G44460.1	PGSC0003DMT400095238	AT3G29575.1	18484180
AT3G44460.1	PGSC0003DMT400018574	AT3G56850.1	21798944
AT3G44460.1	PGSC0003DMT400072260	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g009490.2.1	Tomato	nucleus	95.56	96.01
GSMUA_Achr8P07740_001	Banana	nucleus	41.12	50.72
GSMUA_Achr3P22710_001	Banana	nucleus	37.38	45.58
VIT_06s0080g00340.t01	Wine grape	nucleus	32.71	43.21
KRH22688	Soybean	nucleus	32.94	41.96
AT3G44460.1	Thale cress	nucleus	31.31	40.48
Os01t0859300-01	Rice	nucleus	29.21	38.7
CDY10500	Canola	nucleus	30.14	37.28
Bra019436.1-P	Field mustard	nucleus	29.21	37.2
CDY08701	Canola	nucleus	29.91	36.99
TraesCS3B01G404300.1	Wheat	nucleus	33.64	36.83
TraesCS3B01G404600.1	Wheat	nucleus	33.18	36.69
TraesCS3D01G364900.1	Wheat	nucleus	33.41	36.67
TraesCS3A01G371800.1	Wheat	nucleus	33.41	36.57
TraesCS3B01G404200.1	Wheat	nucleus	33.18	36.41
TraesCS3B01G404400.1	Wheat	nucleus	33.18	36.32
TraesCS3B01G404500.1	Wheat	nucleus	32.71	35.81
PGSC0003DMT400058469	Potato	nucleus	12.15	35.62
PGSC0003DMT400066603	Potato	nucleus	34.11	35.27
PGSC0003DMT400059040	Potato	nucleus	30.14	35.25
PGSC0003DMT400018574	Potato	nucleus	25.93	34.8
KRH37750	Soybean	nucleus	17.06	34.6
KXG33733	Sorghum	nucleus	32.71	34.06
Zm00001d012296_P001	Maize	nucleus	32.71	33.98
PGSC0003DMT400020670	Potato	nucleus	35.75	33.77
PGSC0003DMT400072260	Potato	nucleus	27.34	33.72
TraesCS3A01G372000.1	Wheat	nucleus	30.14	33.68
TraesCS3A01G372200.1	Wheat	nucleus	29.67	33.25
TraesCS3A01G371900.3	Wheat	nucleus	29.67	33.25
TraesCS3D01G365500.1	Wheat	nucleus	29.44	32.9
HORVU3Hr1G084360.2	Barley	nucleus	32.48	32.86
TraesCS3D01G365000.1	Wheat	nucleus	30.14	32.58
TraesCS3A01G372100.2	Wheat	nucleus	28.97	31.71
PGSC0003DMT400015892	Potato	nucleus	30.61	31.64
Zm00001d042779_P001	Maize	nucleus	27.57	30.81
PGSC0003DMT400076576	Potato	nucleus	19.39	29.23
KRH26633	Soybean	mitochondrion	32.01	21.27

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	InterPro:ABI5	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0045893	InterPro:IPR004827	UniProt:M0ZS25	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400002660	PGSC:PGSC0003DMG400002660
EnsemblPlants:PGSC0003DMT400006851	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF217	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0002963EF6	InterPro:bZIP	SEG:seg	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002660]

Coordinates

chr9:+:3205556..3207759

Molecular Weight (calculated)

46406.9 Da

IEP (calculated)

8.943

GRAVY (calculated)

-0.644

Length

428 amino acids

Sequence
(BLAST)

001: MGVPESEMVS QSEVQSPLQP DQNQNKNNPF PSLGRQASIY SLTLDEFQHT VCESGKNFGS MNMDEFLNSI WTAEENQAHA HAHVHAQPHC QAASTGEATS
101: APRFALGQGN VSLQKAIVEQ PSLPRQGSLT LPAPLCSKTV DEVWSEIHKT QQEQQQNNGC SIQNTGNGSS TQRQTTFGEM TLEDFLVKAG VVREQGNSAP
201: APPQQQSYMM YPNSANPTMA RPVIGLGGVT GGVGVGVAIP GYPPLPQTGV VEAPVYPMSM KRGSGFPQQP TPVYGGRMGN GSGVGYGQVV QSVTGMGSPL
301: SPVSSDGLCV NQIDNVGQYG LEIGMRGGRK RVLDGPVEKV VERRQRRMIK NRESAARSRA RKQAYTVELE AELNQLKEEN AHLKQALVAE LERKRKQQYF
401: DEAKTKAQTK AQKANGKLRG MRRSFSCP

Best Arabidopsis Sequence Match ( AT2G36270.1 )
(BLAST)

001: MVTRETKLTS EREVESSMAQ ARHNGGGGGE NHPFTSLGRQ SSIYSLTLDE FQHALCENGK NFGSMNMDEF LVSIWNAEEN NNNQQQAAAA AGSHSVPANH
101: NGFNNNNNNG GEGGVGVFSG GSRGNEDANN KRGIANESSL PRQGSLTLPA PLCRKTVDEV WSEIHRGGGS GNGGDSNGRS SSSNGQNNAQ NGGETAARQP
201: TFGEMTLEDF LVKAGVVREH PTNPKPNPNP NQNQNPSSVI PAAAQQQLYG VFQGTGDPSF PGQAMGVGDP SGYAKRTGGG GYQQAPPVQA GVCYGGGVGF
301: GAGGQQMGMV GPLSPVSSDG LGHGQVDNIG GQYGVDMGGL RGRKRVVDGP VEKVVERRQR RMIKNRESAA RSRARKQAYT VELEAELNQL KEENAQLKHA
401: LAELERKRKQ QYFESLKSRA QPKLPKSNGR LRTLMRNPSC PL

Arabidopsis Description

ABI5Basic-leucine zipper (bZIP) transcription factor family protein [Source:TAIR;Acc:AT2G36270]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.