Factsheet for PGSC0003DMT400058469

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g008980.2.1	Tomato	nucleus	96.58	96.58
VIT_06s0009g01790.t01	Wine grape	nucleus	60.27	35.48
KRG89815	Soybean	nucleus	65.07	34.67
KRH18666	Soybean	nucleus	58.22	30.58
PGSC0003DMT400018574	Potato	nucleus	54.79	25.08
PGSC0003DMT400072260	Potato	nucleus	54.79	23.05
PGSC0003DMT400076576	Potato	nucleus	34.93	17.96
PGSC0003DMT400059040	Potato	nucleus	37.67	15.03
PGSC0003DMT400015892	Potato	nucleus	39.04	13.77
PGSC0003DMT400066603	Potato	nucleus	39.04	13.77
PGSC0003DMT400020670	Potato	nucleus	39.04	12.58
PGSC0003DMT400006851	Potato	nucleus	35.62	12.15

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:M1C2P8	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400022706	PGSC:PGSC0003DMG400022706	EnsemblPlants:PGSC0003DMT400058469	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF263	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002957A21
InterPro:bZIP	SEG:seg	:	:	:	:

Description

BZIP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022706]

Coordinates

chr1:+:5403869..5408639

Molecular Weight (calculated)

16615.8 Da

IEP (calculated)

10.033

GRAVY (calculated)

-0.882

Length

146 amino acids

Sequence
(BLAST)

001: MNNQGRELTL GETTLEDYLV KAGLFVADAS LGHTMSLDNP TAMQNFMPPI GLSPSPSLSD TPVSDRKRGA SDIDKTIDRR LRRKIKNRES AARSRARKQA
101: YHNELVNKVS HLEEENMKLK KEKELENLLS ELSSEPRYQL RRTTSF

Best Arabidopsis Sequence Match ( AT2G41070.4 )
(BLAST)

001: MSSQLKATYM GSIRGNIEEP ISQSLTRQNS LYSLKLHEVQ THLGSSGKPL GSMNLDELLK TVLPPAEEGL VRQGSLTLPR DLSKKTVDEV WRDIQQDKNG
101: NGTSTTTTHK QPTLGEITLE DLLLRAGVVT ETVVPQENVV NIASNGQWVE YHHQPQQQQG FMTYPVCEMQ DMVMMGGLSD TPQAPGRKRV AGEIVEKTVE
201: RRQKRMIKNR ESAARSRARK QAYTHELEIK VSRLEEENEK LRRLKEVEKI LPSEPPPDPK WKLRRTNSAS L

Arabidopsis Description

EELBasic-leucine zipper (bZIP) transcription factor family protein [Source:TAIR;Acc:AT2G41070]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.