Factsheet for PGSC0003DMT400020670

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078840.2.1	Tomato	nucleus	95.14	96.42
CDY65560	Canola	nucleus	43.71	65.56
Bra040260.1-P	Field mustard	nucleus	50.33	62.64
CDY17109	Canola	nucleus	44.81	60.6
AT1G45249.6	Thale cress	nucleus	55.19	58.0
Os06t0211200-01	Rice	nucleus	39.07	54.63
GSMUA_Achr6P30550_001	Banana	nucleus	47.68	54.27
GSMUA_Achr5P24570_001	Banana	nucleus	46.36	54.12
Os02t0766700-01	Rice	nucleus	42.38	53.78
EES07580	Sorghum	nucleus	41.06	53.76
GSMUA_Achr5P05690_001	Banana	nucleus	48.12	53.56
PGSC0003DMT400059040	Potato	nucleus	43.27	53.55
TraesCS6A01G333600.2	Wheat	nucleus	40.84	52.86
TraesCS6B01G364000.1	Wheat	nucleus	40.84	52.71
PGSC0003DMT400066603	Potato	nucleus	47.68	52.17
Zm00001d018178_P001	Maize	nucleus	40.4	52.14
HORVU6Hr1G080670.1	Barley	nucleus	41.06	52.1
HORVU7Hr1G035500.2	Barley	nucleus	37.97	51.65
GSMUA_Achr9P27130_001	Banana	nucleus	45.92	51.61
Os08t0472000-01	Rice	nucleus	36.2	51.57
Zm00001d037170_P001	Maize	nucleus	38.41	51.48
GSMUA_Achr6P04270_001	Banana	nucleus	43.27	51.17
GSMUA_Achr3P07000_001	Banana	nucleus	45.47	51.12
TraesCS6D01G312800.1	Wheat	nucleus	40.62	51.11
TraesCS7B01G075600.1	Wheat	nucleus	38.19	50.88
KXG19586	Sorghum	nucleus	39.07	50.86
PGSC0003DMT400015892	Potato	nucleus	46.14	50.48
TraesCS7A01G170600.1	Wheat	nucleus	37.97	50.15
TraesCS7D01G171300.1	Wheat	nucleus	38.19	50.14
Zm00001d044940_P002	Maize	nucleus	38.41	49.57
OQU80633	Sorghum	nucleus	41.5	49.21
OQU78764	Sorghum	nucleus	33.77	49.04
Os09t0456200-01	Rice	nucleus	39.07	47.07
TraesCS5B01G235600.2	Wheat	nucleus	37.53	46.45
TraesCS5D01G244500.1	Wheat	nucleus	37.53	46.45
HORVU5Hr1G068230.1	Barley	nucleus	37.53	46.32
TraesCS5A01G237200.2	Wheat	nucleus	37.53	46.2
EER96850	Sorghum	nucleus	37.31	46.17
KXG26981	Sorghum	nucleus	16.56	45.45
Zm00001d031790_P002	Maize	nucleus	33.77	42.86
Zm00001d050018_P007	Maize	nucleus	35.1	40.66
Zm00001d020711_P001	Maize	nucleus	35.1	39.26
PGSC0003DMT400058469	Potato	nucleus	12.58	39.04
PGSC0003DMT400018574	Potato	nucleus	27.37	38.87
PGSC0003DMT400072260	Potato	nucleus	28.92	37.75
PGSC0003DMT400006851	Potato	nucleus	33.77	35.75
Zm00001d005884_P002	Maize	nucleus	23.18	34.43
PGSC0003DMT400076576	Potato	nucleus	17.88	28.52

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102577461	MapMan:15.5.4.1	ProteinID:ADL70202	ProteinID:ADL70202.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EMBL:HM988989
InterPro:IPR004827	UniProt:M1ADX2	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400008011	PGSC:PGSC0003DMG400008011	EnsemblPlants:PGSC0003DMT400020670
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF368	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI000296159A	RefSeq:XP_006354876.1	RefSeq:XP_015167533.1	InterPro:bZIP	SEG:seg	:

Description

ABRE binding factor [Source:PGSC_GENE;Acc:PGSC0003DMG400008011]

Coordinates

chr4:-:68125973..68131032

Molecular Weight (calculated)

48797.8 Da

IEP (calculated)

10.039

GRAVY (calculated)

-0.698

Length

453 amino acids

Sequence
(BLAST)

001: MGSNYHFKNF GNEPPGEGGS GGGGGGGKQL GNFGLPRQSS IYSLTFDEFL SSTGGSGKDF GSMNMDELLK NIWNAEENQT IGGPGINGQE VGVPRGHLQR
101: QGSLTLPRTL SHKTVDEVWR DMSKEHGGGK DGNSVGVPPN IPQTQRQQTF GEITLEEFLV RAGVVREDAL FAAKSNNTGG IFGDLSYAGN NTGLAFGYQQ
201: ANNRNTGLMA GSIPNKNGET VIQTANLPLN VNGVRSTQQQ LRPQQLQQNH QPQQQQPQQQ PIFPKQPALP YGAPMAIPNS GQLGSPGMRV GMVGIPDPAL
301: NSNFIQGTAL MGGGMNMVGL GASGVTVATA SPGVSSSDGL GKSNGDTPSV SPVPYVFNGG LRGRKYSTVE KVVERRQRRM IKNRESAARS RARKQAYTME
401: LEAEVAKLKE ENDELQKKQE EMLEMQKNQV MEMMNLHKGA KRRCLRRTQT GPW

Best Arabidopsis Sequence Match ( AT1G45249.6 )
(BLAST)

001: MVQIQLLGGS RFCRKMDGSM NLGNEPPGDG GGGGGLTRQG SIYSLTFDEF QSSVGKDFGS MNMDELLKNI WSAEETQAMA SGVVPVLGGG QEGLQLQRQG
101: SLTLPRTLSQ KTVDQVWKDL SKVGSSGVGG SNLSQVAQAQ SQSQSQRQQT LGEVTLEEFL VRAGVVREEA QVAARAQIAE NNKGGYFGND ANTGFSVEFQ
201: QPSPRVVAAG VMGNLGAETA NSLQVQGSSL PLNVNGARTT YQQSQQQQPI MPKQPGFGYG TQMGQLNSPG IRGGGLVGLG DQSLTNNVGF VQGASAAIPG
301: ALGVGAVSPV TPLSSEGIGK SNGDSSSLSP SPYMFNGGVR GRKSGTVEKV VERRQRRMIK NRESAARSRA RKQAYTVELE AEVAKLKEEN DELQRKQARI
401: MEMQKNQETE MRNLLQGGPK KKLRRTESGP W

Arabidopsis Description

ABF2abscisic acid responsive elements-binding factor 2 [Source:TAIR;Acc:AT1G45249]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.