Factsheet for PGSC0003DMT400076576

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104650.2.1	Tomato	nucleus	96.83	92.59
KRH10463	Soybean	nucleus	26.06	56.92
KRH43979	Soybean	nucleus	30.28	53.75
VIT_12s0055g00420.t01	Wine grape	nucleus	54.58	51.84
KRH42235	Soybean	nucleus, plastid	37.32	44.35
KRH58352	Soybean	nucleus	34.51	43.75
GSMUA_Achr2P20490_001	Banana	nucleus	36.62	42.8
GSMUA_Achr9P08900_001	Banana	nucleus	37.32	42.74
HORVU3Hr1G083250.2	Barley	nucleus	33.1	42.53
TraesCS3D01G371900.1	Wheat	nucleus	37.32	42.4
GSMUA_Achr3P22470_001	Banana	nucleus	38.03	42.19
TraesCS3B01G411300.1	Wheat	nucleus	36.62	41.6
Zm00001d042721_P001	Maize	nucleus	37.68	41.15
TraesCS3A01G378700.1	Wheat	nucleus	36.97	40.86
EES03943	Sorghum	nucleus	36.97	40.08
TraesCS1A01G273000.1	Wheat	nucleus	34.51	38.74
Os01t0867300-01	Rice	nucleus	36.27	38.72
TraesCS1D01G273100.1	Wheat	nucleus	34.15	38.49
TraesCS1B01G282800.1	Wheat	nucleus	34.15	38.49
GSMUA_Achr10P...	Banana	nucleus	35.92	38.2
Zm00001d038311_P001	Maize	nucleus	33.45	37.4
EES18296	Sorghum	nucleus, plastid	34.51	36.7
Os05t0437700-01	Rice	plastid	30.99	35.63
PGSC0003DMT400058469	Potato	nucleus	17.96	34.93
Zm00001d012273_P001	Maize	plastid	28.87	33.61
HORVU1Hr1G074960.8	Barley	mitochondrion, nucleus, plastid	29.58	33.47
PGSC0003DMT400018574	Potato	nucleus	25.7	22.88
PGSC0003DMT400072260	Potato	nucleus	26.76	21.9
PGSC0003DMT400059040	Potato	nucleus	28.17	21.86
PGSC0003DMT400006851	Potato	nucleus	29.23	19.39
PGSC0003DMT400066603	Potato	nucleus	27.46	18.84
PGSC0003DMT400015892	Potato	nucleus	26.41	18.12
PGSC0003DMT400020670	Potato	nucleus	28.52	17.88

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102596569	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M1CX00	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400029774	PGSC:PGSC0003DMG400029774	EnsemblPlants:PGSC0003DMT400076576
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF175	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002968DA5	RefSeq:XP_006351829.1	InterPro:bZIP	SEG:seg	:	:

Description

Basic-leucine zipper [Source:PGSC_GENE;Acc:PGSC0003DMG400029774]

Coordinates

chr1:+:81457484..81461841

Molecular Weight (calculated)

30793.4 Da

IEP (calculated)

7.066

GRAVY (calculated)

-0.713

Length

284 amino acids

Sequence
(BLAST)

001: MASKVMPSAS TTPNSDRSLH PQNPTSSLHH SHPSRNFDSM NMDEILKNIY SDSDPFACSV SATAAAGGGG DDVGPTKTVD EVWREIVGGG GGGGGSREPE
101: MTLEDFLTKA GAVTEEDVRV PVIAPPPPPP ATGAPSSGGF VVDNMMGTGN CQFPVAMQNG PGGYGMEPQP HMGFGNGVVA ITGSGRGKRR STVEELPADR
201: ATQQKQRRMI KNRESAARSR ERKQAYTVEL ESLVTQLEEE NARLVREEEE KNKERLKQIM ENLIPVVEKR RPPRVLRRVR SMSW

Best Arabidopsis Sequence Match ( AT5G44080.1 )
(BLAST)

001: MTSFQVMRSS NSRNSDLSRR ISSASTSSSS IRPQQQFRRD LTSVGYGGRN DGLYSSNSMT VEGILHDTFA SDPPAPTESS LLDASINLMD ASPAPMEITT
101: TTASDVVDHG GGTETTRGGK SVDEIWREMV SGEGKGMKEE TSEEIMTLED FLAKAAVEDE TAVTASAEDL DVKIPVTNYG FDHSAPPHNP FQMIDKVEGS
201: IVAFGNGLDV YGGGARGKRA RVMVEPLDKA AAQRQRRMIK NRESAARSRE RKQAYQVELE ALAAKLEEEN ELLSKEIEDK RKERYQKLME FVIPVVEKPK
301: QQPPRFLRRI RSLEW

Arabidopsis Description

Basic leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9FNB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.