CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038311_P001	Maize	nucleus	80.9	85.04
TraesCS1A01G273000.1	Wheat	nucleus	66.29	69.96
TraesCS1D01G273100.1	Wheat	nucleus	65.92	69.84
TraesCS1B01G282800.1	Wheat	nucleus	65.54	69.44
Os05t0437700-01	Rice	plastid	57.3	61.94
HORVU1Hr1G074960.8	Barley	mitochondrion, nucleus, plastid	56.93	60.56
EES03943	Sorghum	nucleus	57.3	58.4
GSMUA_Achr3P22470_001	Banana	nucleus	44.57	46.48
GSMUA_Achr9P08900_001	Banana	nucleus	43.07	46.37
KRH10463	Soybean	nucleus	21.72	44.62
GSMUA_Achr10P...	Banana	nucleus	41.95	41.95
KRH43979	Soybean	nucleus	24.72	41.25
GSMUA_Achr2P20490_001	Banana	nucleus	35.96	39.51
VIT_18s0072g00470.t01	Wine grape	nucleus, plastid	38.95	37.82
Solyc01g104650.2.1	Tomato	nucleus	38.58	34.68
PGSC0003DMT400076576	Potato	nucleus	36.7	34.51
VIT_12s0055g00420.t01	Wine grape	nucleus	37.83	33.78
KRH58352	Soybean	nucleus	27.72	33.04
KRH42235	Soybean	nucleus, plastid	28.84	32.22
KRH35126	Soybean	nucleus	29.59	31.98
CDY22311	Canola	nucleus, plastid	31.84	31.95
Solyc04g071510.2.1	Tomato	nucleus, plastid	36.7	31.82
Bra033719.1-P	Field mustard	nucleus, plastid	31.09	31.2
CDY54481	Canola	nucleus	33.33	31.12
AT1G03970.1	Thale cress	nucleus, plastid	30.71	30.37
Bra015281.1-P	Field mustard	nucleus, plastid	29.21	29.1
CDX89852	Canola	nucleus, plastid	29.21	29.1
CDY18197	Canola	nucleus, plastid	29.21	29.0
KXG39483	Sorghum	nucleus	26.22	28.69
AT5G44080.1	Thale cress	nucleus	33.33	28.25
EES18419	Sorghum	nucleus	28.84	23.77
EES03785	Sorghum	nucleus	29.59	23.72
KXG26981	Sorghum	nucleus	14.23	23.03
KXG19586	Sorghum	nucleus	28.46	21.84
EES07580	Sorghum	nucleus	27.72	21.39
OQU90534	Sorghum	nucleus	25.09	21.07
EER96850	Sorghum	nucleus	28.46	20.77
OQU78764	Sorghum	nucleus	23.97	20.51
KXG33733	Sorghum	nucleus	30.71	19.95
OQU80633	Sorghum	nucleus	27.72	19.37

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8058517	UniProt:C5YYQ0	ncoils:Coil	EnsemblPlants:EES18296
ProteinID:EES18296	ProteinID:EES18296.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF175	SMART:SM00338	EnsemblPlantsGene:SORBI_3009G152100
SUPFAM:SSF57959	unigene:Sbi.13060	UniParc:UPI0001A8880C	RefSeq:XP_002439866.1	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:50839684..50842676

Molecular Weight (calculated)

27905.8 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.457

Length

267 amino acids

Sequence
(BLAST)

001: MASSRVMASS SPPQHGAGSS SSDLARFRSS SGIGSMNMDD IIRNIYGPDA VNAAAGAGPA EPSPAAAAAA PEAAAAAVAR RTSEEVWKEI SAAGGLSAPV
101: LLPPPPAACS GTGGSRGGAA EMTLEDFLAR DSCARAAVLE GNMALGFPDA DGGDAAGSGV AGGVGVGGGR GSTRKRALLD PADRAVMQRQ KRMIKNRESA
201: ARSRDRKQAY VAELESQVMQ LEEEQAELLR EQEDRRQNRL KELIERVFPV IRKKSSQDLR RTNSMEW

Best Arabidopsis Sequence Match ( AT5G44080.1 )
(BLAST)

001: MTSFQVMRSS NSRNSDLSRR ISSASTSSSS IRPQQQFRRD LTSVGYGGRN DGLYSSNSMT VEGILHDTFA SDPPAPTESS LLDASINLMD ASPAPMEITT
101: TTASDVVDHG GGTETTRGGK SVDEIWREMV SGEGKGMKEE TSEEIMTLED FLAKAAVEDE TAVTASAEDL DVKIPVTNYG FDHSAPPHNP FQMIDKVEGS
201: IVAFGNGLDV YGGGARGKRA RVMVEPLDKA AAQRQRRMIK NRESAARSRE RKQAYQVELE ALAAKLEEEN ELLSKEIEDK RKERYQKLME FVIPVVEKPK
301: QQPPRFLRRI RSLEW

Arabidopsis Description

Basic leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9FNB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.