Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89852 | Canola | nucleus, plastid | 74.44 | 75.0 |
| Bra015281.1-P | Field mustard | nucleus, plastid | 74.07 | 74.63 |
| CDY18197 | Canola | nucleus, plastid | 73.33 | 73.61 |
| AT5G44080.1 | Thale cress | nucleus | 56.67 | 48.57 |
| VIT_18s0072g00470.t01 | Wine grape | nucleus, plastid | 45.93 | 45.09 |
| KRH35126 | Soybean | nucleus | 37.78 | 41.3 |
| GSMUA_Achr9P08900_001 | Banana | nucleus | 36.3 | 39.52 |
| GSMUA_Achr3P22470_001 | Banana | nucleus | 36.67 | 38.67 |
| TraesCS3D01G371900.1 | Wheat | nucleus | 34.81 | 37.6 |
| HORVU3Hr1G083250.2 | Barley | nucleus | 30.74 | 37.56 |
| TraesCS3B01G411300.1 | Wheat | nucleus | 34.44 | 37.2 |
| Solyc04g071510.2.1 | Tomato | nucleus, plastid | 41.85 | 36.69 |
| TraesCS3A01G378700.1 | Wheat | nucleus | 34.81 | 36.58 |
| GSMUA_Achr2P20490_001 | Banana | nucleus | 32.59 | 36.21 |
| EES03943 | Sorghum | nucleus | 34.07 | 35.11 |
| Zm00001d042721_P001 | Maize | nucleus | 32.96 | 34.23 |
| TraesCS1D01G273100.1 | Wheat | nucleus | 31.48 | 33.73 |
| TraesCS1B01G282800.1 | Wheat | nucleus | 31.48 | 33.73 |
| TraesCS1A01G273000.1 | Wheat | nucleus | 31.48 | 33.6 |
| GSMUA_Achr10P... | Banana | nucleus | 32.96 | 33.33 |
| Os01t0867300-01 | Rice | nucleus | 31.85 | 32.33 |
| Os05t0437700-01 | Rice | plastid | 28.52 | 31.17 |
| Zm00001d038311_P001 | Maize | nucleus | 29.26 | 31.1 |
| EES18296 | Sorghum | nucleus, plastid | 30.37 | 30.71 |
| HORVU1Hr1G074960.8 | Barley | mitochondrion, nucleus, plastid | 27.04 | 29.08 |
| Zm00001d012273_P001 | Maize | plastid | 25.56 | 28.28 |
| AT2G41070.4 | Thale cress | nucleus | 25.93 | 25.83 |
| AT3G56850.1 | Thale cress | nucleus | 25.19 | 22.9 |
| AT3G44460.1 | Thale cress | nucleus | 23.7 | 19.34 |
| AT4G34000.2 | Thale cress | nucleus | 26.3 | 15.64 |
| AT2G36270.3 | Thale cress | nucleus | 25.56 | 15.54 |
| AT5G42910.1 | Thale cress | nucleus | 21.11 | 15.41 |
| AT1G49720.2 | Thale cress | nucleus | 21.85 | 14.64 |
| AT3G19290.3 | Thale cress | nucleus | 23.33 | 14.58 |
| AT1G45249.6 | Thale cress | nucleus | 22.96 | 14.39 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EntrezGene:839356 | UniProt:A0A178WKF4 | ProteinID:AAD10673.1 | ProteinID:AEE27640.1 |
| ArrayExpress:AT1G03970 | EnsemblPlantsGene:AT1G03970 | RefSeq:AT1G03970 | TAIR:AT1G03970 | RefSeq:AT1G03970-TAIR-G | EnsemblPlants:AT1G03970.1 |
| TAIR:AT1G03970.1 | EMBL:AY087603 | Unigene:At.26664 | EMBL:BT024495 | ncoils:Coil | Symbol:GBF4 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR004827 | RefSeq:NP_171893.1 | ProteinID:OAP18321.1 | UniProt:P42777 | PFAM:PF00170 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00036 |
| PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF184 | UniProt:Q2HIT6 | SMART:SM00338 | SUPFAM:SSF57959 |
| EMBL:U01823 | UniParc:UPI0000001438 | InterPro:bZIP | SEG:seg | : | : |
Description
GBF4G-box-binding factor 4 [Source:UniProtKB/Swiss-Prot;Acc:P42777]
Coordinates
chr1:+:1018058..1019247
Molecular Weight (calculated)
30587.9 Da
IEP (calculated)
5.746
GRAVY (calculated)
-0.893
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFKLMSSS NSDLSRRNSS SASSSPSIRS SHHLRPNPHA DHSRISFAYG GGVNDYTFAS DSKPFEMAID VDRSIGDRNS VNNGKSVDDV WKEIVSGEQK
101: TIMMKEEEPE DIMTLEDFLA KAEMDEGASD EIDVKIPTER LNNDGSYTFD FPMQRHSSFQ MVEGSMGGGV TRGKRGRVMM EAMDKAAAQR QKRMIKNRES
201: AARSRERKQA YQVELETLAA KLEEENEQLL KEIEESTKER YKKLMEVLIP VDEKPRPPSR PLSRSHSLEW
101: TIMMKEEEPE DIMTLEDFLA KAEMDEGASD EIDVKIPTER LNNDGSYTFD FPMQRHSSFQ MVEGSMGGGV TRGKRGRVMM EAMDKAAAQR QKRMIKNRES
201: AARSRERKQA YQVELETLAA KLEEENEQLL KEIEESTKER YKKLMEVLIP VDEKPRPPSR PLSRSHSLEW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.