Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G371900.1 | Wheat | nucleus | 94.8 | 94.8 |
| TraesCS3A01G378700.1 | Wheat | nucleus | 92.4 | 89.88 |
| HORVU3Hr1G083250.2 | Barley | nucleus | 77.6 | 87.78 |
| Zm00001d042721_P001 | Maize | nucleus | 71.2 | 68.46 |
| EES03943 | Sorghum | nucleus | 70.0 | 66.79 |
| Os01t0867300-01 | Rice | nucleus | 68.4 | 64.29 |
| TraesCS1B01G282800.1 | Wheat | nucleus | 56.8 | 56.35 |
| Zm00001d012273_P001 | Maize | plastid | 54.4 | 55.74 |
| GSMUA_Achr3P22470_001 | Banana | nucleus | 50.4 | 49.22 |
| GSMUA_Achr9P08900_001 | Banana | nucleus | 47.2 | 47.58 |
| KRH10463 | Soybean | nucleus | 24.0 | 46.15 |
| GSMUA_Achr10P... | Banana | nucleus | 49.2 | 46.07 |
| GSMUA_Achr2P20490_001 | Banana | nucleus | 42.8 | 44.03 |
| KRH43979 | Soybean | nucleus | 27.2 | 42.5 |
| VIT_18s0072g00470.t01 | Wine grape | nucleus, plastid | 44.8 | 40.73 |
| PGSC0003DMT400076576 | Potato | nucleus | 41.6 | 36.62 |
| CDY22311 | Canola | nucleus, plastid | 38.8 | 36.47 |
| Bra033719.1-P | Field mustard | nucleus, plastid | 38.0 | 35.71 |
| CDY54481 | Canola | nucleus | 40.8 | 35.66 |
| VIT_12s0055g00420.t01 | Wine grape | nucleus | 42.4 | 35.45 |
| Solyc01g104650.2.1 | Tomato | nucleus | 41.6 | 35.02 |
| Bra015281.1-P | Field mustard | nucleus, plastid | 37.2 | 34.7 |
| CDY18197 | Canola | nucleus, plastid | 37.2 | 34.57 |
| AT1G03970.1 | Thale cress | nucleus, plastid | 37.2 | 34.44 |
| KRH35126 | Soybean | nucleus | 34.0 | 34.41 |
| CDX89852 | Canola | nucleus, plastid | 36.8 | 34.33 |
| KRH58352 | Soybean | nucleus | 30.4 | 33.93 |
| Solyc04g071510.2.1 | Tomato | nucleus, plastid | 41.6 | 33.77 |
| TraesCS4B01G175800.1 | Wheat | nucleus | 29.6 | 32.89 |
| KRH42235 | Soybean | nucleus, plastid | 30.8 | 32.22 |
| AT5G44080.1 | Thale cress | nucleus | 40.4 | 32.06 |
| TraesCS2B01G115700.1 | Wheat | nucleus | 31.2 | 28.47 |
| TraesCS1B01G317100.1 | Wheat | nucleus | 31.6 | 24.53 |
| TraesCS3B01G368300.1 | Wheat | nucleus | 33.2 | 24.2 |
| TraesCS7B01G075600.1 | Wheat | nucleus | 30.0 | 22.06 |
| TraesCS5B01G139800.1 | Wheat | nucleus | 27.6 | 22.04 |
| TraesCS6B01G364000.1 | Wheat | nucleus | 28.8 | 20.51 |
| TraesCS3B01G404200.1 | Wheat | nucleus | 31.2 | 20.0 |
| TraesCS3B01G404300.1 | Wheat | nucleus | 30.8 | 19.69 |
| TraesCS3B01G404500.1 | Wheat | nucleus | 30.4 | 19.44 |
| TraesCS5B01G235600.2 | Wheat | nucleus | 28.0 | 19.13 |
| TraesCS3B01G404600.1 | Wheat | nucleus | 29.6 | 19.12 |
| TraesCS3B01G404400.1 | Wheat | nucleus | 29.6 | 18.93 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009789 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0045893 | GO:GO:1901002 | GO:GO:1902584 | InterPro:IPR004827 | PFAM:PF00170 |
| ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF175 | SMART:SM00338 | SUPFAM:SSF57959 |
| EnsemblPlantsGene:TraesCS3B01G411300 | EnsemblPlants:TraesCS3B01G411300.1 | InterPro:bZIP | TIGR:cd14707 | SEG:seg | : |
Description
No Description!
Coordinates
chr3B:-:647820086..647822817
Molecular Weight (calculated)
26793.6 Da
IEP (calculated)
8.986
GRAVY (calculated)
-0.765
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSRVMASS SSKPPSHTAS DLARFAQAAG RPGGGGGSGL GSMNVEELLR GIYGDAPTPA PDRPASPPVP PLPAPSRQQA TARRTADEVW REITGGSGGE
101: EEAAPASAGG AGEMTLEDFL AREDGAVVRG TEEQVAMPTM ALLGGAEGAR GGGRGRKRQL MDPMDRAAMQ RHKRMIKNRE SAARSRERKQ AYIAELESLV
201: TQLEEENAHL SKEQEEANQR RLKELKEKLT PVIIAKTPSQ DLRRTNSMEW
101: EEAAPASAGG AGEMTLEDFL AREDGAVVRG TEEQVAMPTM ALLGGAEGAR GGGRGRKRQL MDPMDRAAMQ RHKRMIKNRE SAARSRERKQ AYIAELESLV
201: TQLEEENAHL SKEQEEANQR RLKELKEKLT PVIIAKTPSQ DLRRTNSMEW
001: MASFKLMSSS NSDLSRRNSS SASSSPSIRS SHHLRPNPHA DHSRISFAYG GGVNDYTFAS DSKPFEMAID VDRSIGDRNS VNNGKSVDDV WKEIVSGEQK
101: TIMMKEEEPE DIMTLEDFLA KAEMDEGASD EIDVKIPTER LNNDGSYTFD FPMQRHSSFQ MVEGSMGGGV TRGKRGRVMM EAMDKAAAQR QKRMIKNRES
201: AARSRERKQA YQVELETLAA KLEEENEQLL KEIEESTKER YKKLMEVLIP VDEKPRPPSR PLSRSHSLEW
101: TIMMKEEEPE DIMTLEDFLA KAEMDEGASD EIDVKIPTER LNNDGSYTFD FPMQRHSSFQ MVEGSMGGGV TRGKRGRVMM EAMDKAAAQR QKRMIKNRES
201: AARSRERKQA YQVELETLAA KLEEENEQLL KEIEESTKER YKKLMEVLIP VDEKPRPPSR PLSRSHSLEW
Arabidopsis Description
GBF4G-box-binding factor 4 [Source:UniProtKB/Swiss-Prot;Acc:P42777]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.