Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G244500.1 | Wheat | nucleus | 97.81 | 97.81 |
| TraesCS5A01G237200.2 | Wheat | nucleus | 96.99 | 96.47 |
| HORVU5Hr1G068230.1 | Barley | nucleus | 93.72 | 93.46 |
| Os09t0456200-01 | Rice | nucleus | 74.86 | 72.87 |
| EER96850 | Sorghum | nucleus | 70.49 | 70.49 |
| Zm00001d020711_P001 | Maize | nucleus | 64.75 | 58.52 |
| CDY65560 | Canola | nucleus | 43.99 | 53.31 |
| Zm00001d005884_P002 | Maize | nucleus | 43.99 | 52.79 |
| KRH52002 | Soybean | cytosol | 13.93 | 52.04 |
| CDY28083 | Canola | nucleus | 33.33 | 51.48 |
| CDY17109 | Canola | nucleus | 45.63 | 49.85 |
| TraesCS6B01G364000.1 | Wheat | nucleus | 45.9 | 47.86 |
| Bra022409.1-P | Field mustard | nucleus | 45.63 | 47.18 |
| CDX92320 | Canola | nucleus | 45.63 | 47.04 |
| CDX99242 | Canola | nucleus | 45.36 | 46.89 |
| TraesCS7B01G075600.1 | Wheat | nucleus | 43.17 | 46.47 |
| CDY18575 | Canola | nucleus | 44.54 | 46.31 |
| CDY51041 | Canola | nucleus | 41.53 | 46.06 |
| GSMUA_Achr6P30550_001 | Banana | nucleus | 50.0 | 45.98 |
| Bra040260.1-P | Field mustard | nucleus | 45.08 | 45.33 |
| GSMUA_Achr5P05690_001 | Banana | nucleus | 49.73 | 44.72 |
| GSMUA_Achr5P24570_001 | Banana | nucleus | 46.72 | 44.07 |
| CDY68227 | Canola | nucleus | 41.8 | 43.84 |
| Bra001742.1-P | Field mustard | nucleus | 42.35 | 43.66 |
| CDY63041 | Canola | nucleus | 42.08 | 43.5 |
| CDX69020 | Canola | nucleus | 41.53 | 43.43 |
| CDX82302 | Canola | nucleus | 42.9 | 43.13 |
| GSMUA_Achr9P27130_001 | Banana | nucleus | 47.27 | 42.93 |
| GSMUA_Achr6P04270_001 | Banana | nucleus | 44.81 | 42.82 |
| Bra037533.1-P | Field mustard | nucleus | 44.81 | 42.27 |
| Bra018800.1-P | Field mustard | nucleus | 42.35 | 42.12 |
| GSMUA_Achr3P07000_001 | Banana | nucleus | 45.36 | 41.19 |
| CDY58256 | Canola | nucleus | 43.99 | 41.18 |
| VIT_03s0063g00310.t01 | Wine grape | nucleus | 45.9 | 41.08 |
| KRH61298 | Soybean | nucleus | 46.17 | 40.53 |
| Solyc01g108080.2.1 | Tomato | nucleus | 45.63 | 40.34 |
| KRH50289 | Soybean | nucleus | 46.72 | 40.33 |
| PGSC0003DMT400066603 | Potato | nucleus | 44.81 | 39.61 |
| AT1G45249.6 | Thale cress | nucleus | 46.45 | 39.44 |
| AT3G19290.3 | Thale cress | nucleus | 46.45 | 39.35 |
| PGSC0003DMT400059040 | Potato | nucleus | 39.34 | 39.34 |
| VIT_18s0001g10450.t01 | Wine grape | nucleus | 47.81 | 39.15 |
| KRH71134 | Soybean | nucleus | 46.17 | 38.5 |
| CDX72445 | Canola | nucleus | 42.9 | 38.29 |
| Solyc04g078840.2.1 | Tomato | nucleus | 46.72 | 38.26 |
| PGSC0003DMT400020670 | Potato | nucleus | 46.45 | 37.53 |
| PGSC0003DMT400015892 | Potato | nucleus | 41.53 | 36.72 |
| Solyc10g050210.1.1 | Tomato | nucleus | 38.8 | 36.6 |
| AT1G49720.2 | Thale cress | nucleus | 40.16 | 36.48 |
| AT4G34000.2 | Thale cress | nucleus | 44.81 | 36.12 |
| Solyc11g044560.1.1 | Tomato | nucleus | 39.07 | 35.84 |
| TraesCS1B01G317100.1 | Wheat | nucleus | 31.15 | 35.4 |
| Bra011485.1-P | Field mustard | nucleus | 40.71 | 33.94 |
| KRH52003 | Soybean | nucleus | 30.33 | 33.74 |
| TraesCS2B01G115700.1 | Wheat | nucleus | 25.14 | 33.58 |
| TraesCS4B01G175800.1 | Wheat | nucleus | 20.49 | 33.33 |
| TraesCS3B01G368300.1 | Wheat | nucleus | 30.6 | 32.65 |
| TraesCS3B01G404600.1 | Wheat | nucleus | 32.24 | 30.49 |
| TraesCS3B01G404300.1 | Wheat | nucleus | 32.24 | 30.18 |
| TraesCS5B01G139800.1 | Wheat | nucleus | 25.41 | 29.71 |
| TraesCS3B01G404400.1 | Wheat | nucleus | 31.42 | 29.41 |
| TraesCS3B01G404500.1 | Wheat | nucleus | 31.42 | 29.41 |
| TraesCS3B01G404200.1 | Wheat | nucleus | 31.15 | 29.23 |
| CDY22378 | Canola | nucleus | 31.15 | 28.86 |
| Bra017621.1-P | Field mustard | cytosol | 23.5 | 28.86 |
| CDX71528 | Canola | nucleus | 30.6 | 28.64 |
| TraesCS1B01G282800.1 | Wheat | nucleus | 19.4 | 28.17 |
| AT5G42910.1 | Thale cress | nucleus | 28.42 | 28.11 |
| TraesCS3B01G411300.1 | Wheat | nucleus | 19.13 | 28.0 |
| Bra033649.1-P | Field mustard | nucleus | 30.6 | 27.05 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF190 | SMART:SM00338 |
| SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS5B01G235600 | EnsemblPlants:TraesCS5B01G235600.2 | InterPro:bZIP | TIGR:cd14707 | SEG:seg |
Description
No Description!
Coordinates
chr5B:+:415992777..415995707
Molecular Weight (calculated)
39200.7 Da
IEP (calculated)
8.425
GRAVY (calculated)
-0.524
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKEDRWGGT EGIMDFRSSN GGSSSERGPA EAAPLTRQGS IYSLTFEEFQ STLGGGAGVG GSDLGKDFSS MNMDELLRSI WTAEESQAMA ASASGAGAGP
101: PPTSLQGQGS LTLPRTLSAK TVDEVWRNLV RDDPLPVGAE GAEPQPHRQA TLGEMTLEEF LVKAGVVREI PTAPAVPAPP MQPRPVPVVP KGPSFYGNFP
201: SANDAGAAAL GFPPVAMGDL ALANGLMPRA VGMGGAPLVV QTAVNPVDSG GKGSEDLSSP SEPMPYSFEG IVRGRRTGGG VEKVVERRQR RMIKNRESAA
301: RSRARKQAYT MELEAEVQKL KDLNEELVRK QKEILEMQKR EQAPEMKDQF GRKKRQCLRR TLTGPW
101: PPTSLQGQGS LTLPRTLSAK TVDEVWRNLV RDDPLPVGAE GAEPQPHRQA TLGEMTLEEF LVKAGVVREI PTAPAVPAPP MQPRPVPVVP KGPSFYGNFP
201: SANDAGAAAL GFPPVAMGDL ALANGLMPRA VGMGGAPLVV QTAVNPVDSG GKGSEDLSSP SEPMPYSFEG IVRGRRTGGG VEKVVERRQR RMIKNRESAA
301: RSRARKQAYT MELEAEVQKL KDLNEELVRK QKEILEMQKR EQAPEMKDQF GRKKRQCLRR TLTGPW
001: MGTHIDINNL GGDTSRGNES KPLARQSSLY SLTFDELQST LGEPGKDFGS MNMDELLKNI WTAEDTQAFM TTTSSVAAPG PSGFVPGGNG LQRQGSLTLP
101: RTLSQKTVDE VWKYLNSKEG SNGNTGTDAL ERQQTLGEMT LEDFLLRAGV VKEDNTQQNE NSSSGFYANN GAAGLEFGFG QPNQNSISFN GNNSSMIMNQ
201: APGLGLKVGG TMQQQQQPHQ QQLQQPHQRL PPTIFPKQAN VTFAAPVNMV NRGLFETSAD GPANSNMGGA GGTVTATSPG TSSAENNTWS SPVPYVFGRG
301: RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIESLKLVN QDLQKKQAEI MKTHNSEVIT FFLYLSKGIF EAASIAGQKT MLEKNPYRSV
401: VRR
101: RTLSQKTVDE VWKYLNSKEG SNGNTGTDAL ERQQTLGEMT LEDFLLRAGV VKEDNTQQNE NSSSGFYANN GAAGLEFGFG QPNQNSISFN GNNSSMIMNQ
201: APGLGLKVGG TMQQQQQPHQ QQLQQPHQRL PPTIFPKQAN VTFAAPVNMV NRGLFETSAD GPANSNMGGA GGTVTATSPG TSSAENNTWS SPVPYVFGRG
301: RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIESLKLVN QDLQKKQAEI MKTHNSEVIT FFLYLSKGIF EAASIAGQKT MLEKNPYRSV
401: VRR
Arabidopsis Description
ABF1Abscisic acid responsive element-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:F4I3C9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.