Factsheet for Solyc01g108080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066603	Potato	nucleus	93.24	93.24
Solyc11g044560.1.1	Tomato	nucleus	60.39	62.66
Solyc10g050210.1.1	Tomato	nucleus	57.49	61.34
VIT_03s0063g00310.t01	Wine grape	nucleus	56.52	57.21
CDY28083	Canola	nucleus	31.16	54.43
CDY18575	Canola	nucleus	45.41	53.41
CDX99242	Canola	nucleus	45.65	53.39
CDY63041	Canola	nucleus	44.69	52.26
Bra022409.1-P	Field mustard	nucleus	44.44	51.98
CDX92320	Canola	nucleus	44.44	51.83
CDY68227	Canola	nucleus	43.48	51.58
CDX69020	Canola	nucleus	43.48	51.43
Bra001742.1-P	Field mustard	nucleus	43.96	51.27
CDY51041	Canola	nucleus	40.82	51.21
CDX82302	Canola	nucleus	44.69	50.82
Bra037533.1-P	Field mustard	nucleus	47.58	50.77
CDY58256	Canola	nucleus	47.83	50.64
Os06t0211200-01	Rice	nucleus	39.61	50.62
KRH50289	Soybean	nucleus	51.21	50.0
Solyc04g078840.2.1	Tomato	nucleus	52.66	48.77
HORVU7Hr1G035500.2	Barley	nucleus	39.13	48.65
TraesCS6A01G333600.2	Wheat	nucleus	41.06	48.57
EES07580	Sorghum	nucleus	40.58	48.55
Zm00001d037170_P001	Maize	nucleus	39.61	48.52
GSMUA_Achr6P30550_001	Banana	nucleus	46.62	48.49
Os02t0766700-01	Rice	nucleus	41.79	48.46
TraesCS6B01G364000.1	Wheat	nucleus	41.06	48.43
Bra018800.1-P	Field mustard	nucleus	43.0	48.37
TraesCS7B01G075600.1	Wheat	nucleus	39.37	47.94
AT3G19290.3	Thale cress	nucleus	50.0	47.92
KRH71134	Soybean	nucleus	50.72	47.84
OQU78764	Sorghum	nucleus	35.75	47.44
KXG19586	Sorghum	nucleus	39.86	47.41
HORVU6Hr1G080670.1	Barley	nucleus	40.82	47.34
Zm00001d044940_P002	Maize	nucleus	40.1	47.29
TraesCS7D01G171300.1	Wheat	nucleus	39.37	47.25
TraesCS7A01G170600.1	Wheat	nucleus	39.13	47.23
TraesCS6D01G312800.1	Wheat	nucleus	41.06	47.22
Os08t0472000-01	Rice	nucleus	36.23	47.17
OQU80633	Sorghum	nucleus	43.48	47.12
GSMUA_Achr5P05690_001	Banana	nucleus	46.14	46.93
GSMUA_Achr9P27130_001	Banana	nucleus	45.65	46.9
CDX72445	Canola	nucleus	46.38	46.83
Os09t0456200-01	Rice	nucleus	42.51	46.81
EER96850	Sorghum	nucleus	41.3	46.72
Zm00001d018178_P001	Maize	nucleus	39.37	46.44
HORVU5Hr1G068230.1	Barley	nucleus	41.06	46.32
GSMUA_Achr6P04270_001	Banana	nucleus	42.75	46.21
TraesCS5A01G237200.2	Wheat	nucleus	41.06	46.2
TraesCS5D01G244500.1	Wheat	nucleus	40.82	46.17
GSMUA_Achr5P24570_001	Banana	nucleus	43.0	45.88
TraesCS5B01G235600.2	Wheat	nucleus	40.34	45.63
AT1G49720.2	Thale cress	nucleus	43.24	44.42
AT4G34000.2	Thale cress	nucleus	46.86	42.73
GSMUA_Achr3P07000_001	Banana	nucleus	41.55	42.68
Zm00001d031790_P002	Maize	nucleus	35.99	41.74
Bra011485.1-P	Field mustard	nucleus	43.96	41.46
KXG26981	Sorghum	nucleus	16.43	41.21
Zm00001d050018_P007	Maize	nucleus	38.41	40.66
Zm00001d020711_P001	Maize	nucleus	37.92	38.77
Bra017621.1-P	Field mustard	cytosol	27.29	37.92
Solyc01g008980.2.1	Tomato	nucleus	13.29	37.67
Solyc10g081350.1.1	Tomato	nucleus	29.95	35.43
Zm00001d005884_P002	Maize	nucleus	25.6	34.75
Solyc09g009490.2.1	Tomato	nucleus	35.75	34.74
Solyc10g076920.1.1	Tomato	nucleus	22.46	32.86
Solyc04g071510.2.1	Tomato	nucleus, plastid	20.53	27.6
Solyc01g104650.2.1	Tomato	nucleus	19.57	27.27
Solyc01g009510.1.1	Tomato	nucleus	11.84	25.79

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4B324	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF158
SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc01g108080.2	EnsemblPlants:Solyc01g108080.2.1	UniParc:UPI000276805D	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:95439141..95441506

Molecular Weight (calculated)

45030.9 Da

IEP (calculated)

10.245

GRAVY (calculated)

-0.690

Length

414 amino acids

Sequence
(BLAST)

001: MGSYMNFKNI TDKPQAESNG GKSVGNGDIP LARQSSIYSL TFDELQTTFS GLGKDFGSIN MEELLKSIWT AEESQAATSS TGGGEDGIAP VGNLQRQGSL
101: TLPRTLSQKT VDEVWRNFQK ETTVCTPDGS ETGKSNFGQR QSTLGEMTLE EFLVKAGVVR EDMQSTSNSS GITFNNGLSQ QNNNNGFNIA FQQPTQNNGL
201: LINQIAANNM LNVVGATASQ QQQPQQQQPL FPKQTTVAFA SPMQLSNNGH LASPRTRAPA VGMSSPSVNA SMAQGGVMGK TGFHNGVSPA KVGSPGNDFI
301: ARSNVDTSSL SPSPYAFSEG GRGRRSGSSL EKVVERRRRR MIKNRESAAR SRARKQAYTL ELEAEVAKLK EINEELRKKQ AEIIEKQKNQ LTDKRNMTCG
401: YKLRCLRRTL TGPW

Best Arabidopsis Sequence Match ( AT1G45249.1 )
(BLAST)

001: MDGSMNLGNE PPGDGGGGGG LTRQGSIYSL TFDEFQSSVG KDFGSMNMDE LLKNIWSAEE TQAMASGVVP VLGGGQEGLQ LQRQGSLTLP RTLSQKTVDQ
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENDELQR KQARIMEMQK NQETEMRNLL
401: QGGPKKKLRR TESGPW

Arabidopsis Description

ABF2abscisic acid responsive elements-binding factor 2 [Source:TAIR;Acc:AT1G45249]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.