Factsheet for PGSC0003DMT400066603

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108080.2.1	Tomato	nucleus	93.24	93.24
PGSC0003DMT400059040	Potato	nucleus	59.66	67.49
PGSC0003DMT400015892	Potato	nucleus	62.8	62.8
VIT_03s0063g00310.t01	Wine grape	nucleus	56.28	56.97
CDY28083	Canola	nucleus	31.64	55.27
CDY18575	Canola	nucleus	45.41	53.41
CDX99242	Canola	nucleus	45.65	53.39
CDY63041	Canola	nucleus	44.69	52.26
Bra022409.1-P	Field mustard	nucleus	44.69	52.26
CDX92320	Canola	nucleus	44.69	52.11
Bra001742.1-P	Field mustard	nucleus	43.72	50.99
CDY51041	Canola	nucleus	40.58	50.91
Bra037533.1-P	Field mustard	nucleus	47.58	50.77
CDY68227	Canola	nucleus	42.75	50.72
CDY58256	Canola	nucleus	47.83	50.64
CDX82302	Canola	nucleus	44.2	50.27
CDX69020	Canola	nucleus	42.27	50.0
KRH50289	Soybean	nucleus	51.21	50.0
Os06t0211200-01	Rice	nucleus	38.41	49.07
AT3G19290.3	Thale cress	nucleus	50.0	47.92
Bra018800.1-P	Field mustard	nucleus	42.51	47.83
PGSC0003DMT400020670	Potato	nucleus	52.17	47.68
Os02t0766700-01	Rice	nucleus	41.06	47.62
TraesCS6A01G333600.2	Wheat	nucleus	40.1	47.43
EES07580	Sorghum	nucleus	39.61	47.4
KRH71134	Soybean	nucleus	50.24	47.38
TraesCS6B01G364000.1	Wheat	nucleus	40.1	47.29
GSMUA_Achr6P30550_001	Banana	nucleus	45.41	47.24
Zm00001d037170_P001	Maize	nucleus	38.41	47.04
Os08t0472000-01	Rice	nucleus	35.99	46.86
HORVU7Hr1G035500.2	Barley	nucleus	37.44	46.55
OQU80633	Sorghum	nucleus	42.75	46.34
HORVU6Hr1G080670.1	Barley	nucleus	39.86	46.22
Zm00001d044940_P002	Maize	nucleus	39.13	46.15
OQU78764	Sorghum	nucleus	34.78	46.15
TraesCS6D01G312800.1	Wheat	nucleus	40.1	46.11
CDX72445	Canola	nucleus	45.65	46.1
Os09t0456200-01	Rice	nucleus	41.79	46.01
KXG19586	Sorghum	nucleus	38.65	45.98
GSMUA_Achr5P05690_001	Banana	nucleus	45.17	45.95
TraesCS7B01G075600.1	Wheat	nucleus	37.68	45.88
EER96850	Sorghum	nucleus	40.34	45.63
HORVU5Hr1G068230.1	Barley	nucleus	40.34	45.5
GSMUA_Achr9P27130_001	Banana	nucleus	44.2	45.41
TraesCS5D01G244500.1	Wheat	nucleus	40.1	45.36
Zm00001d018178_P001	Maize	nucleus	38.41	45.3
TraesCS7D01G171300.1	Wheat	nucleus	37.68	45.22
TraesCS7A01G170600.1	Wheat	nucleus	37.44	45.19
TraesCS5A01G237200.2	Wheat	nucleus	40.1	45.11
TraesCS5B01G235600.2	Wheat	nucleus	39.61	44.81
GSMUA_Achr6P04270_001	Banana	nucleus	41.3	44.65
GSMUA_Achr5P24570_001	Banana	nucleus	41.79	44.59
AT1G49720.2	Thale cress	nucleus	42.27	43.42
AT4G34000.2	Thale cress	nucleus	46.14	42.07
GSMUA_Achr3P07000_001	Banana	nucleus	40.34	41.44
Zm00001d031790_P002	Maize	nucleus	35.02	40.62
Bra011485.1-P	Field mustard	nucleus	43.0	40.55
KXG26981	Sorghum	nucleus	15.94	40.0
Zm00001d050018_P007	Maize	nucleus	37.68	39.9
PGSC0003DMT400058469	Potato	nucleus	13.77	39.04
Bra017621.1-P	Field mustard	cytosol	27.05	37.58
Zm00001d020711_P001	Maize	nucleus	36.72	37.53
PGSC0003DMT400072260	Potato	nucleus	29.71	35.45
PGSC0003DMT400018574	Potato	nucleus	26.81	34.8
PGSC0003DMT400006851	Potato	nucleus	35.27	34.11
Zm00001d005884_P002	Maize	nucleus	25.12	34.1
PGSC0003DMT400076576	Potato	nucleus	18.84	27.46

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102591655	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M1CFV6	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400025889	PGSC:PGSC0003DMG400025889	EnsemblPlants:PGSC0003DMT400066603
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF158	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI000294CD69	RefSeq:XP_006346411.1	InterPro:bZIP	SEG:seg	:	:

Description

Phi-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400025889]

Coordinates

chr1:-:84455276..84461796

Molecular Weight (calculated)

45035.8 Da

IEP (calculated)

10.305

GRAVY (calculated)

-0.733

Length

414 amino acids

Sequence
(BLAST)

001: MGSYMNFKNV ADTPQLESNG GKSIGNGDFP LARQSSIYSL TFDELQTTFS GLGKDFGSIN MEELLKSIWT AEESQAVTSS TGGGGDGNAP VGNLQRQGSL
101: TLPRTLSQKT VDEVWRNFQK ETTVCTKDGS DTGKSNFGQR QSTLGEMTLE EFLVKAGVVG EDMQSTSNSS GITFNNGSSQ QNNNNGFNIA FQQPTQNTGL
201: LINQIAANNM LNVVDPTASQ QQQPQKQQPL FPKQTTVAFS SPMQLSNNGH LASPRTRAPA VGMSSPSVNA NMAQGGVMGM TGFYNGVSPA KGGSPGNDFV
301: ARSNVDTSSL SPSPYAYSEG GRGRRSGSSL EKVVERRRRR MIKNRESAAR SRARKQAYTL ELEAEVAKLK KINEELRKKQ AEIIENQKNQ LTDKRNMPRG
401: YKLRCLRRTL TGPW

Best Arabidopsis Sequence Match ( AT3G19290.5 )
(BLAST)

001: MGTHINFNNL GGGGHPGGEG SSNQMKPTGS VMPLARQSSV YSLTFDELQN TLGGPGKDFG SMNMDELLKS IWTAEEAQAM AMTSAPAATA VAQPGAGIPP
101: PGGNLQRQGS LTLPRTISQK TVDEVWKCLI TKDGNMEGSS GGGGESNVPP GRQQTLGEMT LEEFLFRAGV VREDNCVQQM GQVNGNNNNG FYGNSTAAGG
201: LGFGFGQPNQ NSITFNGTND SMILNQPPGL GLKMGGTMQQ QQQQQQLLQQ QQQQMQQLNQ PHPQQRLPQT IFPKQANVAF SAPVNITNKG FAGAANNSIN
301: NNNGLASYGG TGVTVAATSP GTSSAENNSL SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKTN QELQKKQAEM
401: VEMQKNELKE TSKRPWGSKR QCLRRTLTGP W

Arabidopsis Description

ABF4ABRE binding factor 4 [Source:UniProtKB/TrEMBL;Acc:F4JB53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.