Factsheet for TraesCS6A01G333600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G364000.1	Wheat	nucleus	95.14	94.87
TraesCS6D01G312800.1	Wheat	nucleus	97.14	94.44
HORVU6Hr1G080670.1	Barley	nucleus	95.43	93.56
Os02t0766700-01	Rice	nucleus	74.29	72.83
EES07580	Sorghum	nucleus	70.86	71.68
Zm00001d018178_P001	Maize	nucleus	68.57	68.38
TraesCS7A01G170600.1	Wheat	nucleus	60.0	61.22
KRH52002	Soybean	cytosol	15.71	56.12
CDY65560	Canola	nucleus	47.14	54.64
CDY28083	Canola	nucleus	34.29	50.63
CDY17109	Canola	nucleus	48.29	50.45
Bra040260.1-P	Field mustard	nucleus	50.0	48.08
CDY18575	Canola	nucleus	48.29	48.01
GSMUA_Achr6P30550_001	Banana	nucleus	54.0	47.49
CDY51041	Canola	nucleus	44.57	47.27
CDY68227	Canola	nucleus	46.86	46.99
CDX99242	Canola	nucleus	47.43	46.89
CDX69020	Canola	nucleus	46.57	46.57
Bra022409.1-P	Field mustard	nucleus	46.86	46.33
CDX92320	Canola	nucleus	46.86	46.2
TraesCS5A01G237200.2	Wheat	nucleus	48.29	45.92
CDY63041	Canola	nucleus	46.29	45.76
Bra037533.1-P	Field mustard	nucleus	49.71	44.85
CDX82302	Canola	nucleus	46.57	44.78
Bra001742.1-P	Field mustard	nucleus	45.14	44.51
VIT_03s0063g00310.t01	Wine grape	nucleus	51.14	43.77
GSMUA_Achr5P05690_001	Banana	nucleus	50.29	43.24
Bra018800.1-P	Field mustard	nucleus	45.43	43.21
KRH61298	Soybean	nucleus	51.43	43.17
CDY58256	Canola	nucleus	48.0	42.97
GSMUA_Achr5P24570_001	Banana	nucleus	47.43	42.78
PGSC0003DMT400059040	Potato	nucleus	44.29	42.35
VIT_18s0001g10450.t01	Wine grape	nucleus	54.0	42.28
GSMUA_Achr6P04270_001	Banana	nucleus	46.0	42.04
GSMUA_Achr9P27130_001	Banana	nucleus	48.0	41.69
Solyc04g078840.2.1	Tomato	nucleus	52.86	41.39
AT1G45249.6	Thale cress	nucleus	50.86	41.3
Solyc01g108080.2.1	Tomato	nucleus	48.57	41.06
PGSC0003DMT400020670	Potato	nucleus	52.86	40.84
KRH50289	Soybean	nucleus	49.14	40.57
AT3G19290.3	Thale cress	nucleus	50.0	40.51
CDX72445	Canola	nucleus	47.43	40.49
PGSC0003DMT400066603	Potato	nucleus	47.43	40.1
Solyc10g050210.1.1	Tomato	nucleus	44.29	39.95
PGSC0003DMT400015892	Potato	nucleus	46.0	38.89
KRH71134	Soybean	nucleus	48.57	38.72
GSMUA_Achr3P07000_001	Banana	nucleus	44.57	38.71
Solyc11g044560.1.1	Tomato	nucleus	44.0	38.6
AT1G49720.2	Thale cress	nucleus	43.14	37.47
AT4G34000.2	Thale cress	nucleus	47.43	36.56
Bra011485.1-P	Field mustard	nucleus	45.43	36.22
KRH52003	Soybean	nucleus	32.86	34.95
TraesCS2A01G099400.1	Wheat	nucleus	25.71	32.85
TraesCS4A01G128900.1	Wheat	nucleus	20.86	32.44
Bra017621.1-P	Field mustard	cytosol	27.14	31.88
AT5G42910.1	Thale cress	nucleus	32.86	31.08
TraesCS1A01G306300.1	Wheat	nucleus	28.29	30.56
TraesCS3A01G337200.1	Wheat	nucleus	29.43	30.47
TraesCS3A01G371800.1	Wheat	nucleus	33.14	29.67
TraesCS3A01G378700.1	Wheat	nucleus	21.14	28.79
CDY22378	Canola	nucleus	32.0	28.35
CDX71528	Canola	nucleus	31.43	28.13
TraesCS5A01G141500.1	Wheat	nucleus	25.14	28.11
TraesCS1A01G273000.1	Wheat	nucleus	20.0	27.67
Bra033649.1-P	Field mustard	nucleus	32.0	27.05
TraesCS3A01G372200.1	Wheat	nucleus	29.43	26.96
TraesCS3A01G372000.1	Wheat	nucleus	29.43	26.89
TraesCS3A01G371900.3	Wheat	nucleus	29.14	26.7
TraesCS3A01G372100.2	Wheat	nucleus	29.14	26.09

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009738	GO:GO:0009987	InterPro:IPR004827
PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF103	SMART:SM00338
SUPFAM:SSF57959	EnsemblPlantsGene:TraesCS6A01G333600	EnsemblPlants:TraesCS6A01G333600.2	InterPro:bZIP	TIGR:cd14707	SEG:seg

Description

No Description!

Coordinates

chr6A:+:564716150..564720056

Molecular Weight (calculated)

37820.3 Da

IEP (calculated)

10.262

GRAVY (calculated)

-0.641

Length

350 amino acids

Sequence
(BLAST)

001: MDFPGGSGRP HQHQQHHHQP LPLTRQGSSV YSLTFDEFQS ALGGPGKDFG SMNMDELLRN IWTAEESQAI GAGPNAAASS SAAAGQDHGG IQRQGSLTLP
101: RTLSQKTVDE VWRDMMFFGG PSAAAEAPPP AQRQQTLGEV TLEEFLVRAG VVREDMPGPP PPVSPAPVAQ APPPQPQMLF PQSNMFAPMV NPLSLANGLM
201: TGAYGQGGGG GGGGAAAMVS PSPTGRPVMS NGYGKMEGLN LSSLSPPPMP YVFSGGLRGR KPPAMEKVVE RRQRRMIKNR ESAARSRQRK QSYMMELETE
301: VAKLKERNEE LQRKQAEMLE RQKNEVFEKV TRQAGPTSKR ICLRRTLTGP

Best Arabidopsis Sequence Match ( AT3G19290.4 )
(BLAST)

001: MGTHINFNNL GGGGHPGGEG SSNQMKPTGS VMPLARQSSV YSLTFDELQN TLGGPGKDFG SMNMDELLKS IWTAEEAQAM AMTSAPAATA VAQPGAGIPP
101: PGGNLQRQGS LTLPRTISQK TVDEVWKCLI TKDGNMEGSS GGGGESNVPP GRQQTLGEMT LEEFLFRAGV VREDNCVQQM GQVNGNNNNG FYGNSTAAGG
201: LGFGFGQPNQ NSITFNGTND SMILNQPPGL GLKMGGTMQQ QQQQQQLLQQ QQQQMQQLNQ PHPQQRLPQT IFPKQANVAF SAPVNITNKG FAGAANNSIN
301: NNNGLASYGG TGVTVAATSP GTSSAENNSL SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKTN QELQKKQAEM
401: VEMQKNEVIV

Arabidopsis Description

ABF4ABRE binding factor 4 [Source:UniProtKB/TrEMBL;Acc:F4JB53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.