Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059040 | Potato | nucleus | 86.47 | 94.26 |
| Solyc01g108080.2.1 | Tomato | nucleus | 62.66 | 60.39 |
| Solyc10g050210.1.1 | Tomato | nucleus | 54.64 | 56.19 |
| CDY28083 | Canola | nucleus | 30.58 | 51.48 |
| CDX99242 | Canola | nucleus | 44.36 | 50.0 |
| CDY18575 | Canola | nucleus | 43.11 | 48.86 |
| Bra022409.1-P | Field mustard | nucleus | 42.86 | 48.31 |
| CDX92320 | Canola | nucleus | 42.86 | 48.17 |
| CDY68227 | Canola | nucleus | 42.11 | 48.14 |
| Os06t0211200-01 | Rice | nucleus | 38.85 | 47.84 |
| VIT_03s0063g00310.t01 | Wine grape | nucleus | 48.87 | 47.68 |
| CDY51041 | Canola | nucleus | 39.35 | 47.58 |
| CDY63041 | Canola | nucleus | 42.11 | 47.46 |
| CDX69020 | Canola | nucleus | 41.35 | 47.14 |
| Bra001742.1-P | Field mustard | nucleus | 40.6 | 45.63 |
| Bra037533.1-P | Field mustard | nucleus | 44.36 | 45.62 |
| CDX82302 | Canola | nucleus | 41.6 | 45.6 |
| EES07580 | Sorghum | nucleus | 38.85 | 44.8 |
| Os08t0472000-01 | Rice | nucleus | 35.59 | 44.65 |
| KRH50289 | Soybean | nucleus | 47.37 | 44.58 |
| Bra018800.1-P | Field mustard | nucleus | 41.1 | 44.57 |
| CDY58256 | Canola | nucleus | 43.61 | 44.5 |
| TraesCS6A01G333600.2 | Wheat | nucleus | 38.6 | 44.0 |
| Os02t0766700-01 | Rice | nucleus | 39.35 | 43.98 |
| TraesCS6B01G364000.1 | Wheat | nucleus | 38.6 | 43.87 |
| HORVU7Hr1G035500.2 | Barley | nucleus | 36.59 | 43.84 |
| Zm00001d037170_P001 | Maize | nucleus | 37.09 | 43.79 |
| Solyc04g078840.2.1 | Tomato | nucleus | 48.87 | 43.62 |
| Zm00001d018178_P001 | Maize | nucleus | 38.35 | 43.59 |
| AT3G19290.3 | Thale cress | nucleus | 46.87 | 43.29 |
| TraesCS7B01G075600.1 | Wheat | nucleus | 36.84 | 43.24 |
| KRH71134 | Soybean | nucleus | 47.37 | 43.05 |
| HORVU6Hr1G080670.1 | Barley | nucleus | 38.35 | 42.86 |
| KXG19586 | Sorghum | nucleus | 37.34 | 42.82 |
| GSMUA_Achr5P24570_001 | Banana | nucleus | 41.6 | 42.78 |
| TraesCS6D01G312800.1 | Wheat | nucleus | 38.6 | 42.78 |
| Zm00001d044940_P002 | Maize | nucleus | 37.59 | 42.73 |
| OQU80633 | Sorghum | nucleus | 40.85 | 42.67 |
| TraesCS7D01G171300.1 | Wheat | nucleus | 36.84 | 42.61 |
| TraesCS7A01G170600.1 | Wheat | nucleus | 36.59 | 42.57 |
| GSMUA_Achr5P05690_001 | Banana | nucleus | 43.11 | 42.26 |
| CDX72445 | Canola | nucleus | 43.36 | 42.2 |
| GSMUA_Achr9P27130_001 | Banana | nucleus | 42.61 | 42.18 |
| OQU78764 | Sorghum | nucleus | 32.83 | 41.99 |
| GSMUA_Achr6P30550_001 | Banana | nucleus | 41.85 | 41.96 |
| EER96850 | Sorghum | nucleus | 38.35 | 41.8 |
| GSMUA_Achr6P04270_001 | Banana | nucleus | 39.85 | 41.51 |
| Os09t0456200-01 | Rice | nucleus | 38.6 | 40.96 |
| GSMUA_Achr3P07000_001 | Banana | nucleus | 41.1 | 40.69 |
| TraesCS5A01G237200.2 | Wheat | nucleus | 36.84 | 39.95 |
| AT4G34000.2 | Thale cress | nucleus | 45.36 | 39.87 |
| HORVU5Hr1G068230.1 | Barley | nucleus | 36.34 | 39.51 |
| TraesCS5D01G244500.1 | Wheat | nucleus | 36.09 | 39.34 |
| AT1G49720.2 | Thale cress | nucleus | 39.6 | 39.21 |
| TraesCS5B01G235600.2 | Wheat | nucleus | 35.84 | 39.07 |
| Bra011485.1-P | Field mustard | nucleus | 40.1 | 36.45 |
| Zm00001d031790_P002 | Maize | nucleus | 32.58 | 36.41 |
| Solyc01g008980.2.1 | Tomato | nucleus | 13.28 | 36.3 |
| Zm00001d050018_P007 | Maize | nucleus | 35.34 | 36.06 |
| KXG26981 | Sorghum | nucleus | 14.54 | 35.15 |
| Zm00001d020711_P001 | Maize | nucleus | 35.09 | 34.57 |
| Bra017621.1-P | Field mustard | cytosol | 24.56 | 32.89 |
| Solyc10g081350.1.1 | Tomato | nucleus | 28.07 | 32.0 |
| Zm00001d005884_P002 | Maize | nucleus | 24.06 | 31.48 |
| Solyc10g076920.1.1 | Tomato | nucleus | 21.55 | 30.39 |
| Solyc09g009490.2.1 | Tomato | nucleus | 31.33 | 29.34 |
| Solyc01g104650.2.1 | Tomato | nucleus | 20.3 | 27.27 |
| Solyc04g071510.2.1 | Tomato | nucleus, plastid | 20.3 | 26.3 |
| Solyc01g009510.1.1 | Tomato | nucleus | 11.03 | 23.16 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| UniProt:K4D8C3 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF158 |
| SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:Solyc11g044560.1 | EnsemblPlants:Solyc11g044560.1.1 | UniParc:UPI000276A454 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:32458669..32463971
Molecular Weight (calculated)
44138.2 Da
IEP (calculated)
8.900
GRAVY (calculated)
-0.538
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEIFWMIYQ QIGKNHAYSL QNLYLPKRIL FVVTMGSYLN FKNFADTSQP ESSGNNSNSF LAQQSSIYSF TFDELQNTCG LGKDFGSMNM DDLLKNIEES
101: QALSSSAALG GNLQRQGSLT LPRTLSQKTV DEVWRDFQKE SVVANDASGT GGSNFGQRES TLGEMTLEEF LVRAGAVQED MQPAGYSNDV TFASGFTQPS
201: CSVTIAFQQA TQNPGHQIAA NNIFNVVSTT TSSPQQPLFP KQTTVEFASP MQLGSPGKRL PMSNPSANTS SVMQGGVMTM PVKGVSPGNL DTSSLSPSPY
301: ACGEGGRGRR SCTSFEKVVE RRRKRMIKNR ESAARSRDRK QAYTLELEAE VAKLKEIKQE LQKKQAEFIE KQKNQLLEKM NVPWENKLIC LRRTVTGPW
101: QALSSSAALG GNLQRQGSLT LPRTLSQKTV DEVWRDFQKE SVVANDASGT GGSNFGQRES TLGEMTLEEF LVRAGAVQED MQPAGYSNDV TFASGFTQPS
201: CSVTIAFQQA TQNPGHQIAA NNIFNVVSTT TSSPQQPLFP KQTTVEFASP MQLGSPGKRL PMSNPSANTS SVMQGGVMTM PVKGVSPGNL DTSSLSPSPY
301: ACGEGGRGRR SCTSFEKVVE RRRKRMIKNR ESAARSRDRK QAYTLELEAE VAKLKEIKQE LQKKQAEFIE KQKNQLLEKM NVPWENKLIC LRRTVTGPW
001: MDGSMNLGNE PPGDGGGGGG LTRQGSIYSL TFDEFQSSVG KDFGSMNMDE LLKNIWSAEE TQAMASGVVP VLGGGQEGLQ LQRQGSLTLP RTLSQKTVDQ
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENDELQR KQARIMEMQK NQETEMRNLL
401: QGGPKKKLRR TESGPW
101: VWKDLSKVGS SGVGGSNLSQ VAQAQSQSQS QRQQTLGEVT LEEFLVRAGV VREEAQVAAR AQIAENNKGG YFGNDANTGF SVEFQQPSPR VVAAGVMGNL
201: GAETANSLQV QGSSLPLNVN GARTTYQQSQ QQQPIMPKQP GFGYGTQMGQ LNSPGIRGGG LVGLGDQSLT NNVGFVQGAS AAIPGALGVG AVSPVTPLSS
301: EGIGKSNGDS SSLSPSPYMF NGGVRGRKSG TVEKVVERRQ RRMIKNRESA ARSRARKQAY TVELEAEVAK LKEENDELQR KQARIMEMQK NQETEMRNLL
401: QGGPKKKLRR TESGPW
Arabidopsis Description
ABF2abscisic acid responsive elements-binding factor 2 [Source:TAIR;Acc:AT1G45249]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.